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Conference's program
Program
of the International school for young scientists "Bioinformatics
methods and next generation sequencing technologies",
Novosibirsk,
Institute of Cytology and Genetics SB RAS
August 26-30, 2011
August 26, Friday
Arrival of the participants to the
hotel "Zolotaya Dolina"
12.00 – 18.00
Registration of the participants at the Institute of Cytology and
Genetics
14.00 – 14.30
Opening ceremony in the Institute of Cytology and Genetics
Conference hall.
Introduction:
"High-performance computing in
bioinformatics : Inter-institutional Shared Computing Facility
Center "Bioinformatics", Dr.
Yury Orlov, Head of the Inter-institutional Shared Computing
Facility Center "Bioinformatics".
14.30
– 17.30 – Lecture session
14.30-16.10
“A probabilistic framework for predicting chromosomal order and
orientation of DNA sequence scaffolds of a de novo assembled genome”
Dr. Denis Larkin, Aberystwyth University, Aberystwyth, UK
16.10-16.30
Coffee-break
16.30-17.30
“Assembling and functional annotation of genome and transcriptome
using next generation sequencing technology data“.
Dr. Artem Kasianov, V.A. Engelhardt Institute of Molecular Biology
RAS, Moscow, Russia
August 27, Saturday
Institute of Cytology and Genetics
9.30 – 13.00
Practical courses
Institute of
Cytology and genetics computer schoolroom
9.30 – 11.30
"Analysis and
visualization of NGS data in Unipro UGENE".
Unipro company, Novosibirsk, Russia.
11.30-11.50
Coffee break.
11.50
– 13.00 “Introduction to
High-performance computing clusters”, Dr.
Dmitry Afonnikov, Institute of Cytology
and Genetics SB RAS, Novosibirsk, Russia
13.00 – 14.30
Lunch break
14.30 – 18.00
Participants’s presentations session
20 min
for presentation+5 min for questions/discussion
“Development of a model system to study gene
interactions of parental forms in wheat-rye hybrids and primary
triticale” N.D.
Tikhenko; St. Petersburg branch of the
N.I. Vavilov Institute of General Genetics, St. Petersburg, Russia
“Development of molecular
markers for genes underlying salt stress resistance in
Medicago L. Species” M.S.
Vishnevskaya, A.V. Pavlov, E.A.
Dzyubenko, N.I. Dzyubenko, E.K. Potokina; N.I. Vavilov Research
Institute of Plant Industry, St. Petersburg, Russia
“HMM-based prediction of
human miRNAs and the analysis of “young” miRNAs”
P.S. Vorozheykin;
Novosibirsk State University, Novosibirsk, Russia
“Development and optimization
of the genome mapping algorithm” G.A.
Grekhov; Information technology center
UniPro, Novosibirsk, Russia
Poster Session
“Della-mutations
in plants” G. A. Chebotar,
S.V. Chebotar; South Plant Biotechnology Center NAAN Ukraine, Odesa,
Ukraine
“Identification of leaf
rust resistance genes in wild relativces, sinthetik forms and
introgression lines of commmon wheat(Triticum aestivum L.)”
E.R. Davoyan,
R.O. Davoyan, Yu. S. Zubanova, I. V. Bebyakina., A.M. Kravchenko,
A.N. Zinchenko; Krasnodar Research Institute of Agricultural by name
P.P. Lukianenko, Krasnodar, Russia
“Polymorphism of the
exon 11 of the Lr34 locus in ukrainian wheat cultivars”
A.V. Karelov,
Ya.V. Pirko, N.A. Kozub, I.A. Sozinov, Ya.B. Blume, A.A. Sozinov;
Institute of Food Biotechnology and Genomics, Natl. Academy of
Sciences of Ukraine, Kiev, Ukraine
“Bread wheat germplasm
resistance to stem rust race Ug 99”
M.A. Levshunov;
Omsk State Agrarian University, Omsk, Russia
“Genetic network of NF1,
NF2 and associated transcription factors”
K. A. Golovnina; Institute of Cytology and Genetics SB RAS,
Novosibirsk, Russia
“A new approach in breeding enlarging the
range of variability of common wheat (Triticum aestivum L.)”
K.Kh. Makhmudova,
E.D. Bogdanova, S.S. Kirikovich, N.A. Vinichenko, E.V. Levites;
Institute of Plant Biology and Biotechnology MES RK, Almaty,
Kazakhstan
“Technological
properties of grain and flour in bread wheat lines with
introgressions from Aegilops speltoides and Aegilops markgrafii”
M.F. Ermakova, A.K. Chistyakova, L.V.
Shchukina, T.A. Pshenichnikova, E.V.
Morozova, A.V. Simonov, A. Weidner, A. B?rner; Institute of
Cytology and Genetics SB RAS, Novosibirsk, Russia
“Chromosomal location of
the gene QS introgressed in bread wheat from Aegilops speltoides
tausch, and it’s interaction with the gene Q from Triticum spelta
L.” A.V.
Simonov, T.A. Pshenichnikova;
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
August 28, Sunday
9.30 – 13.10
Lecture session
Institute of Cytology and Genetics Conference Hall
9.30 – 11.10
“SOLiD technology for high-throughput sequencing”, Dr.
Gennady Vasiliev, Institute of Cytology and Genetics SB RAS,
Novosibirsk, Russia
11.10
- 11.30 Coffee break.
11.30 – 13.10
“Bioinformatics processing of the SOLiD sequence data”, Dr.
Dmitry Afonnikov, Institute of Cytology and Genetics SB RAS,
Novosibirsk, Russia
13.10
– 14.00 Lunch break
14.00 – 18.30 Joint
session with the plenary talks of the «Wheat genetic resources and
genomics» at the House of Scientists
18.30
– 20.00 Welcome reception at the House of Scientists
August 29, Monday
9.30 – 13.10 Lecture session
Institute of Cytology and Genetics Conference
Hall
9.30 – 11.10
“How proteins read sequence information from DNA?”
Prof. Akinori Sarai, Kyushu Institute of Technology, Iizuka, Japan
11.10-11.30
Coffee break
11.30-13.10
“Protein-protein interactions: evolution, prediction and
regulation” Dr. Anna Panchenko,
NCBI, Bethesda, USA
13.10 – 14.30
Lunch break
14.30
– 18.00 Practical courses
Institute of Cytology and genetics computer schoolroom
“Using Bfast program to
map SOLiD sequencing data to reference genome”,
Dr. Dmitry Afonnikov, Institute of Cytology and Genetics SB RAS,
Novosibirsk, Russia
August 30, Tuesday
9.30 – 13.10 Lecture session with coffee
break
Institute of Cytology and Genetics Conference Hall
9.30-11.10
“Computer analysis of high throughput sequencing with chromatin
immunoprecipitation (ChIP-seq) in human and model organisms
genomes”. Dr. Yury Orlov, Institute
of Cytology and Genetics SB RAS, Novosibirsk, Russia
11.10-11.30
Coffee break
11.30 – 13.10
“Exon-intron gene structure and
ubiquity of alternative splicing”.
Dr. Vladimir Babenko, Institute of Cytology and Genetics SB RAS,
Novosibirsk, Russia
13.10
Closing ceremony
20.00 Bus excursion to
Novosibirsk
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