Публикации ИЦиГ СО РАН в журналах с высоким импакт-фактором 2016-2017 годы

Публикации ИЦиГ в журналах с высоким импакт-фактором в 2017 году


1) Chaos and Hyperchaos in a Model of Ribosome Autocatalytic Synthesis

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5151018/

Likhoshvai VA, Kogai VV, Fadeev SI, Khlebodarova TM

SCIENTIFIC REPORTS
Том: 6
Номер статьи: 38870
DOI: 10.1038/srep38870
Опубликовано: DEC 12 2016
iF 5.228

2) A quantitative method for determination of PPDK concentration in miscanthus leaves

http://onlinelibrary.wiley.com/doi/10.1111/gcbb.12361/full

Meshcheryakova IA, Bannikova SV, Rozanov AS, Demidova EV, Demidov EA, Goryachkovskaya TN, Burmakina NV, Shekhovtsov SV, Bryanskaya AV, Kolchanov NA, Peltek SE

GLOBAL CHANGE BIOLOGY BIOENERGY
Том: 9 Выпуск: 1 Стр.: 262-269 Специальный выпуск: SI
DOI: 10.1111/gcbb.12361
Опубликовано: JAN 2017
iF 6.151

Abstract:

          In this study, we used ELISA for quantification of PPDK in photosynthesizing leaves of miscanthus. We cloned a fragment of the gene encoding PPDK, purified the resulting protein by affinity chromatography, identified it using MALDI mass spectrometry, and obtained monoclonal antibodies by immunizing BALB/c mice. Selectivity of monoclonal antibodies was assessed by Western blot using the protein extracts of Soranovskii. The presence of PPDK was again verified by MALDI mass spectrometry. Therefore, we developed and tested the method for determining PPDK quantity in miscanthus using ELISA.

3) Evaluation of the SeedCounter, A Mobile Application for Grain Phenotyping

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5151018/

Komyshev E, Genaev M, Afonnikov D

FRONTIERS IN PLANT SCIENCE
Том: 7
Номер статьи: 1990
DOI: 10.3389/fpls.2016.01990
Опубликовано: JAN 4 2017
iF 4.495

Abstract:

Grain morphometry in cereals is an important step in selecting new high-yielding plants. Manual assessment of parameters such as the number of grains per ear and grain size is laborious. One solution to this problem is image-based analysis that can be performed using a desktop PC. Furthermore, the effectiveness of analysis performed in the field can be improved through the use of mobile devices. In this paper, we propose a method for the automated evaluation of phenotypic parameters of grains using mobile devices running the Android operational system. The experimental results show that this approach is efficient and sufficiently accurate for the large-scale analysis of phenotypic characteristics in wheat grains. Evaluation of our application under six different lighting conditions and three mobile devices demonstrated that the lighting of the paper has significant influence on the accuracy of our method, unlike the smartphone type.

4) The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana

http://onlinelibrary.wiley.com/doi/10.1111/gcbb.12361/full

Zemiyanskaya EV, Leyitsky VG, Oshchepkov DY, Grosse I, Mironova VV

FRONTIERS IN PLANT SCIENCE
Том: 7
Номер статьи: 2044
DOI: 10.3389/fpls.2016.02044
Опубликовано: JAN 9 2017
iF 4.495

Abstract:

The plant hormone ethylene regulates numerous developmental processes and stress responses. Ethylene signaling proceeds via a linear pathway, which activates transcription factor (TF) EIN3, a primary transcriptional regulator of ethylene response. EIN3 influences gene expression upon binding to a specific sequence in gene promoters. This interaction, however, might be considerably affected by additional co-factors. In this work, we perform whole genome bioinformatics study to identify the impact of epigenetic factors in EIN3 functioning. The analysis of publicly available ChIP-Seq data on EIN3 binding in Arabidopsis thaliana showed bimodality of distribution of EIN3 binding regions (EBRs) in gene promoters. Besides a sharp peak in close proximity to transcription start site, which is a common binding region for a wide variety of TFs, we found an additional extended peak in the distal promoter region. We characterized all EBRs with respect to the epigenetic status appealing to previously published genome-wide map of nine chromatin states in A. thaliana. We found that the implicit distal peak was associated with a specific chromatin state (referred to as chromatin state 4 in the primary source), which was just poorly represented in the pronounced proximal peak. Intriguingly, EBRs corresponding to this chromatin state 4 were significantly associated with ethylene response, unlike the others representing the overwhelming majority of EBRs related to the explicit proximal peak. Moreover, we found that specific EIN3 binding sequences predicted with previously described model were enriched in the EBRs mapped to the chromatin state 4, but not to the rest ones. These results allow us to conclude that the interplay of genetic and epigenetic factors might cause the distinct modes of EIN3 regulation.


5) Contributions of age-related alterations of the retinal pigment epithelium and of glia to the AMD-like pathology in OXYS rats

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5278403/

Telegina, DV, Kozhevnikova, OS, Bayborodin, SI, Kolosova, NG

SCIENTIFIC REPORTS
Том: 7
Номер статьи: 41533
DOI: 10.1038/srep41533
Опубликовано: JAN 30 2017
iF 5.228

Abstract:

Age-related macular degeneration (AMD) is a major cause of blindness in developed countries, and the molecular pathogenesis of early events of AMD is poorly understood. It is known that age-related alterations of retinal pigment epithelium (RPE) cells and of glial reactivity are early hallmarks of AMD. Here we evaluated contributions of the age-related alterations of the RPE and of glia to the development of AMD-like retinopathy in OXYS rats. We showed that destructive alterations in RPE cells are a primary change during the development of retinopathy in OXYS rats. Furthermore, a defect of retinal maturation and decreased immune function at the preclinical stage of retinopathy were observed in OXYS rats in addition to the impairment of RPE cell proliferation and of their capacity for division. At the active stage of the disease, the atrophic alterations increased, and reactive gliosis was observed when disease progressed, but immune function stayed weakened. Unexpectedly, we did not observe migration of microglia and macrophages into the photoreceptor layer. These results and the wide spectrum of age-related retinal alterations in humans as well as individual differences in the risk of AMD may be attributed to genetic factors and to differences in the underlying molecular events.

6) Gene expression profiling of tumor-initiating stem cells from mouse Krebs-2 carcinoma using a novel marker of poorly differentiated cells

https://www.ncbi.nlm.nih.gov/pubmed/28031533

Potter EA, Dolgova EV, Proskurina AS, Efremov YR, Minkevich AM, Rozanov AS, Peltek SE, Nikolin VP, Popova NA, Seledtsov IA, Molodtsov VV, Zavyalov EL, Taranov OS, Baiborodin SI, Ostanin AA, Chernykh ER, Kolchanov, NA, Bogachev SS.

ONCOTARGET
Том: 8 Выпуск: 6 Стр.: 9425-9441
DOI: 10.18632/oncotarget.14116
Опубликовано: 2017
iF 5.008

Abstract:

Using the ability of poorly differentiated cells to natively internalize fragments of extracellular double-stranded DNA as a marker, we isolated a tumorigenic subpopulation present in Krebs-2 ascites that demonstrated the features of tumor-inducing cancer stem cells. Having combined TAMRA-labeled DNA probe and the power of RNA-seq technology, we identified a set of 168 genes specifically expressed in TAMRA-positive cells (tumor-initiating stem cells), these genes remaining silent in TAMRA-negative cancer cells. TAMRA+ cells displayed gene expression signatures characteristic of both stem cells and cancer cells. The observed expression differences between TAMRA+ and TAMRA- cells were validated by Real Time PCR. The results obtained corroborated the biological data that TAMRA+ murine Krebs-2 tumor cells are tumor-initiating stem cells. The approach developed can be applied to profile any poorly differentiated cell types that are capable of immanent internalization of double-stranded DNA.

7) Nonsynonymous Variation in NKPD1 Increases Depressive Symptoms in European Populations

https://www.ncbi.nlm.nih.gov/pubmed/27745872

Amin N, Belonogova NM, Jovanova O, Brouwer RWW, van Rooij JGJ, van den Hout MCGN, Svishcheva GR, Kraaij R, Zorkoltseva IV, Kirichenko AV, Hofman A, Uitterlinden AG, van IJcken WFJ, Tiemeier H, Axenovich TI, van Duijn CM.

BIOLOGICAL PSYCHIATRY
Том: 81 Выпуск: 8 Стр.: 702-707
DOI: 10.1016/j.biopsych.2016.08.008
Опубликовано: APR 15 2017
iF 11.212

Abstract:

BACKGROUND: Despite high heritability, little success was achieved in mapping genetic determinants of depression-related traits by means of genome-wide association studies.

METHODS: To identify genes associated with depressive symptomology, we performed a gene-based association analysis of nonsynonymous variation captured using exome-sequencing and exome-chip genotyping in a genetically isolated population from the Netherlands (n = 1999). Finally, we reproduced our significant findings in an independent population-based cohort ( n 5 1604).

RESULTS: We detected significant association of depressive symptoms with a gene NKPD1 (p = 3.7*102(-08)). Nonsynonymous variants in the gene explained 0.9% of sex-and age-adjusted variance of depressive symptoms in the discovery study, which is translated into 3.8% of the total estimated heritability (h(2) = 0.24). Significant association of depressive symptoms with NKPD1 was also observed ( n = 1604; p = 1.5 * 10(-03)) in the independent replication sample despite little overlap with the discovery cohort in the set of nonsynonymous genetic variants observed in the NKPD1 gene. Meta-analysis of the discovery and replication studies improved the association signal (p = 1.0 * 10(-09)).

CONCLUSIONS: Our study suggests that nonsynonymous variation in the gene NKPD1 affects depressive symptoms in the general population. NKPD1 is predicted to be involved in the de novo synthesis of sphingolipids, which have been implicated in the pathogenesis of depression.

8) The age-associated loss of ischemic preconditioning in the kidney is accompanied by mitochondrial dysfunction, increased protein acetylation and decreased autophagy

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5353572/

Jankauskas SS, Pevzner IB, Andrianova NV, Zorova LD, Popkov VA, Silachev DN, Kolosova NG, Plotnikov EY, Zorov DB.

SCIENTIFIC REPORTS
Том: 7
Номер статьи: 44430
DOI: 10.1038/srep44430
Опубликовано: MAR 15 2017
iF 5.228

Abstract:

In young rats, ischemic preconditioning (IPC), which consists of 4 cycles of ischemia and reperfusion alleviated kidney injury caused by 40-min ischemia. However, old rats lost their ability to protect the ischemic kidney by IPC. A similar aged phenotype was demonstrated in 6-month-old OXYS rats having signs of premature aging. In the kidney of old and OXYS rats, the levels of acetylated nuclear proteins were higher than in young rats, however, unlike in young rats, acetylation levels in old and OXYS rats were further increased after IPC. In contrast to Wistar rats, age-matched OXYS demonstrated no increase in lysosome abundance and LC3 content in the kidney after ischemia/reperfusion. The kidney LC3 levels were also lower in OXYS, even under basal conditions, and mitochondrial PINK1 and ubiquitin levels were higher, suggesting impaired mitophagy. The kidney mitochondria from old rats contained a population with diminished membrane potential and this fraction was expanded by IPC. Apparently, oxidative changes with aging result in the appearance of malfunctioning renal mitochondria due to a low efficiency of autophagy. Elevated protein acetylation might be a hallmark of aging which is associated with a decreased autophagy, accumulation of dysfunctional mitochondria, and loss of protection against ischemia by IPC.

9) AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs

https://www.ncbi.nlm.nih.gov/pubmed/28039164

Kochetov AV, Allmer J, Klimenko AI, Zuraev BS, Matushkin YG, Lashin SA.

BIOINFORMATICS
Том: 33 Выпуск: 6 Стр.: 923-925
DOI: 10.1093/bioinformatics/btw736
Опубликовано: MAR 15 2017
iF 5.766

Abstract:

Motivation: Protein synthesis is not a straight forward process and one gene locus can produce many isoforms, for example, by starting mRNA translation from alternative start sites. altORF evaluator (altORFev) predicts alternative open reading frames within eukaryotic mRNA translated by a linear scanning mechanism and its modifications (leaky scanning and reinitiation). The program reveals the efficiently translated altORFs recognized by the majority of 40S ribosomal subunits landing on the 50-end of an mRNA. This information aids to reveal the functions of eukaryotic genes connected to synthesis of either unknown isoforms of annotated proteins or new unrelated polypeptides.

10) Ancestry and demography and descendants of Iron Age nomads of the Eurasian Steppe

https://www.ncbi.nlm.nih.gov/labs/articles/28256537/

Unterlander M, Palstra F, Lazaridis I, Pilipenko A, Hofmanova Z, Gross M, Sell C, Blocher J, Kirsanow K, Rohland N, Rieger B, Kaiser E, Schier W, Pozdniakov D, Khokhlov A, Georges M, Wilde S, Powell A, Heyer E, Currat M, Reich D, Samashev Z, Parzinger H, Molodin VI, Burger J.

NATURE COMMUNICATIONS
Том: 8
Номер статьи: 14615
DOI: 10.1038/ncomms14615
Опубликовано: MAR 3 2017
iF 11.329

Abstract:

During the 1st millennium before the Common Era (BCE), nomadic tribes associated with the Iron Age Scythian culture spread over the Eurasian Steppe, covering a territory of more than 3,500 km in breadth. To understand the demographic processes behind the spread of the Scythian culture, we analysed genomic data from eight individuals and a mitochondrial dataset of 96 individuals originating in eastern and western parts of the Eurasian Steppe. Genomic inference reveals that Scythians in the east and the west of the steppe zone can best be described as a mixture of Yamnaya-related ancestry and an East Asian component. Demographic modelling suggests independent origins for eastern and western groups with ongoing gene-flow between them, plausibly explaining the striking uniformity of their material culture. We also find evidence that significant gene-flow from east to west Eurasia must have occurred early during the Iron Age.

11) The Systems Biology of Auxin in Development Embryos

https://www.ncbi.nlm.nih.gov/pubmed/28131745

Mironova V, Teale W, Shahriari M, Dawson J, Palme K.

TRENDS IN PLANT SCIENCE
Том: 22 Выпуск: 3 Стр.: 225-235
DOI: 10.1016/j.tplants.2016.11.010
Опубликовано: MAR 2017
iF 10.899

Abstract:

Systems biology orientates signaling pathways in their biological context. This aim invariably requires models that ignore extraneous factors and focus on the most crucial pathways of any given process. The developing embryo encapsulates many important processes in plant development; understanding their interaction will be key to designing crops able to maximize yield in an ever-more challenging world. Here, we briefly summarize the role of auxin during embryo development. We highlight recent advances in our understanding of auxin signaling and discuss implications for a systems understanding of development.

12) The effect of long-term hindlimb unloading on the expression of risk neurogenes encoding elements of serotonin-, dopaminergic systems and apoptosis; comparison with the effect of actual spaceflight on mouse brain

https://www.ncbi.nlm.nih.gov/labs/articles/28088578/

Kulikova EA, Kulikov VA, Sinyakova NA, Kulikov AV, Popova NK.

NEUROSCIENCE LETTERS
Том: 640 Стр.: 88-92
DOI: 10.1016/j.neulet.2017.01.023
Опубликовано: FEB 15 2017
iF 2.107

Abstract:

The study of spaceflight effects on the brain is technically complex concern; complicated by the problem of applying an adequate ground model. The most-widely used experimental model to study the effect of microgravity is the tail-suspension hindlimb unloading model; however, its compliance with the effect of actual spaceflight on the brain is still unclear. We evaluated the effect of one month hindlimb unloading on the expression of genes related to the brain neuroplasticity brain neutotrophic factors (Gdnf, Cdnf), apoptotic factors (Bcl-xl, Bax), serotonin- and dopaminergic systems (5-HT2A, Maoa, Maob, Th, D1r, Comt), and compared the results with the data obtained on mice that spent one month in spaceflight on Russian biosatellite Bion-M1. No effect of hindlimb unloading was observed on the expression of most genes, which were considered as risk neurogenes for long-term actual spaceflight. The opposite effect of hindlimb unloading and spaceflight was found on the level of mRNA of D1 dopamine receptor and catechol-O-methyltransferase in the striatum. At the same time, the expression of Maob in the midbrain decreased, and the expression of Bcl-xl genes increased in the hippocampus, which corresponds to the effect of spaceflight. However, the hindlimb unloading model failed to reproduce the majority of effects of long-term spaceflight on serotonin-, dopaminergic systems and some apoptotic factors. (C) 2017 Elsevier B.V. All rights reserved.

13) High-resolution three-dimensional macromolecular proton fraction mapping for quantitative neuroanatomical imaging of the rodent brain in ultra-high magnetic fields

https://www.ncbi.nlm.nih.gov/pubmed/27646128

Naumova AV, Akulov AE, Khodanovich MY, Yarnykh VL.

NEUROIMAGE
Том: 147 Стр.: 985-993
DOI: 10.1016/j.neuroimage.2016.09.036
Опубликовано: FEB 15 2017
iF 5.463

Abstract:

A well-known problem in ultra-high-field MRI is generation of high-resolution three-dimensional images for detailed characterization of white and gray matter anatomical structures. T-1-weighted imaging traditionally used for this purpose suffers from the loss of contrast between white and gray matter with an increase of magnetic field strength. Macromolecular proton fraction (MPF) mapping is a new method potentially capable to mitigate this problem due to strong myelin-based contrast and independence of this parameter of field strength. MPF is a key parameter determining the magnetization transfer effect in tissues and defined within the two-pool model as a relative amount of macromolecular protons involved into magnetization exchange with water protons. The objectives of this study were to characterize the two-pool model parameters in brain tissues in ultra-high magnetic fields and introduce fast high-field 3D MPF mapping as both anatomical and quantitative neuroimaging modality for small animal applications. In vivo imaging data were obtained from four adult male rats using an 11.7 T animal MRI scanner. Comprehensive comparison of brain tissue contrast was performed for standard R-1 and T-2 maps and reconstructed from Z-spectroscopic images two-pool model parameter maps including MPF, cross-relaxation rate constant, and T, of pools. Additionally, high-resolution whole-brain 3D MPF maps were obtained with isotropic 170 mu m voxel size using the single-point synthetic-reference method. MPF maps showed 3-6-fold increase in contrast between white and gray matter compared to other parameters. MPF measurements by the single-point synthetic reference method were in excellent agreement with the Z-spectroscopic method. MPF values in rat brain structures at 11.7 T were similar to those at lower field strengths, thus confirming field independence of MPF. 3D MPF mapping provides a useful tool for neuroimaging in ultra-high magnetic fields enabling both quantitative tissue characterization based on the myelin content and high-resolution neuroanatomical visualization with high contrast between white and gray matter. (C) 2016 Elsevier Inc. All rights reserved.

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Публикации ИЦиГ в журналах с высоким импакт-фактором в 2016 году


1) Whole exome sequencing links dental tumor to an autosomal-dominant mutation in ANO5 gene associated with gnathodiaphyseal dysplasia and muscle dystrophies

https://www.ncbi.nlm.nih.gov/pubmed/27216912

Andreeva TV; Tyazhelova TV; Rykalina VN; Gusev FE; Goltsov AY; Zolotareva OI; Aliseichik MP; Borodina TA; Grigorenko AP; Reshetov DA; Ginter EK; Amelina SS; Zinchenko RA; Rogaev EI

SCIENTIFIC REPORTS
Том: 6
Номер статьи: 26440
DOI: 10.1038/srep26440
Опубликовано: MAY 24 2016
IF 5.228

2) Apoptosis-mediated endothelial toxicity but not direct calcification or functional changes in anti-calcification proteins defines pathogenic effects of calcium phosphate bions

https://www.ncbi.nlm.nih.gov/pubmed/27251104

Kutikhin A. G., Velikanova E. A., Mukhamadiyarov R. A., Glushkova T. V., Borisov V. V., Matveeva V. G., Antonova L. V., Filip'ev D. E., Golovkin A. S., Shishkova D. K., Burago A. Y., Frolov A. V., Dolgov V. Y., Efimova O. S., Popova A. N., Malysheva V. Y., Vladimirov A. A., Sozinov S. A., Ismagilov Z. R., Russakov D. M., Lomzov A. A., Pyshnyi D. V., Gutakovsky A. K., Zhivodkov Y. A., Demidov E. A., Peltek S. E., Dolganyuk V. F., Babich O. O., Grigoriev E. V., Brusina E. B., Barbarash O. L., Yuzhalin A. E.

SCIENTIFIC REPORTS
Том: 6
Номер статьи: 27255
DOI: 10.1038/srep27255
Опубликовано: JUN 2 2016
IF 5.228

3) Some pitfalls in application of functional data analysis approach to association studies

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819216/

Svishcheva G. R., Belonogova N. M., Axenovich T. I.

SCIENTIFIC REPORTS
Том: 6
Номер статьи: 23918
DOI: 10.1038/srep23918
Опубликовано: APR 4 2016
IF 5.228

4) Cytological basis of sterility in male and female hybrids between sibling species of grey voles Microtus arvalis and M. levis

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5109913/

Torgasheva A. A., Borodin P. M

SCIENTIFIC REPORTS
Том: 6
Номер статьи: 36564
DOI: 10.1038/srep36564
Опубликовано: NOV 4 2016
IF 5.228

5) Combined effects of social stress and liver fluke infection in a mouse model

https://www.ncbi.nlm.nih.gov/pubmed/26778779

Avgustinovich D. F., Marenina M. K., Zhanaeva S. Y., Tenditnik M. V., Katokhin A. V., Pavlov K. S., Sivkov A. Y., Vishnivetskaya G. B., Lvova M. N., Tolstikova T. G., Mordvinov V. A.

BRAIN BEHAVIOR AND IMMUNITY
Том: 53 Стр.: 262-272
DOI: 10.1016/j.bbi.2016.01.012
Опубликовано: MAR 2016
IF 5.874

6) Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

https://www.ncbi.nlm.nih.gov/pubmed/25886366

Battulin N., Fishman V. S., Mazur A. M., Pomaznoy M., Khabarova A. A., Afonnikov D. A., Prokhortchouk E. B., Serov O. L.

GENOME BIOLOGY
Том: 17
Номер статьи: 6
DOI: 10.1186/s13059-016-0868-5
Опубликовано: JAN 14 2016
IF 11.313

7) FREGAT: an R package for region-based association analysis

https://www.ncbi.nlm.nih.gov/pubmed/27153598

Belonogova N. M., Svishcheva G. R., Axenovich T. I.

BIOINFORMATICS
Том: 32 Выпуск: 15 Стр.: 2392-2393
DOI: 10.1093/bioinformatics/btw160
Опубликовано: AUG 1 2016
IF 5.766

8) Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster

https://www.ncbi.nlm.nih.gov/pubmed/26429969

Chereji R. V., Kan T. W., Grudniewska M. K., Romashchenko A. V., Berezikov E., Zhimulev I. F., Guryev V., Morozov A. V., Moshkin Y. M.

NUCLEIC ACIDS RESEARCH
Том: 44 Выпуск: 3 Стр.: 1036-1051
DOI: 10.1093/nar/gkv978
Опубликовано: FEB 18 2016
IF 9.202

9) Guanine quadruplex structures localize to heterochromatin

https://www.ncbi.nlm.nih.gov/pubmed/26384414

Hoffmann R. F., Moshkin Y. M., Mouton S., Grzeschik N. A., Kalicharan R. D., Kuipers J., Wolters A. H. G., Nishida K., Romashchenko A. V., Postberg J., Lipps H., Berezikov E., Sibon O. C. M., Giepmans B. N. G., Lansdorp P. M.

NUCLEIC ACIDS RESEARCH
Том: 44 Выпуск: 1 Стр.: 152-163
DOI: 10.1093/nar/gkv900
Опубликовано: JAN 8 2016
IF 9.202

10) p53 coordinates base excision repair to prevent genomic instability

https://www.ncbi.nlm.nih.gov/pubmed/26773055

Poletto M., Legrand A. J., Fletcher S. C., Dianov G. L.

NUCLEIC ACIDS RESEARCH
Том: 44 Выпуск: 7 Стр.: 3165-3175
DOI: 10.1093/nar/gkw015
Опубликовано: APR 20 2016
IF 9.202

11) Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

https://www.ncbi.nlm.nih.gov/pubmed/27001520

St Laurent G., Vyatkin Y., Antonets D., Ri M., Qi Y., Saik O., Shtokalo D., de Hoon M. J. L., Kawaji H., Itoh M., Lassmann T., Arner E., Forrest A. R. R., Nicolas E., McCaffrey T. A., Carninci P., Hayashizaki Y., Wahlestedt C., Kapranov P., Consortium F.

NUCLEIC ACIDS RESEARCH
Том: 44 Выпуск: 7 Стр.: 3233-3252
DOI: 10.1093/nar/gkw162
Опубликовано: APR 20 2016
IF 9.202

12) Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families

https://www.ncbi.nlm.nih.gov/pubmed/27392075

Ilumae A. M., Reidla M., Chukhryaeva M., Jarve M., Post H., Karmin M., Saag L., Agdzhoyan A., Kushniarevich A., Litvinov S., Ekomasova N., Tambets K., Metspalu E., Khusainova R., Yunusbayev B., Khusnutdinova E. K., Osipova L. P., Fedorova S., Utevska O., Koshel S., Balanovska E., Behar D. M., Balanovsky O., Kivisild T., Underhill P. A., Villems R., Rootsi S.

AMERICAN JOURNAL OF HUMAN GENETICS
Том: 99 Выпуск: 1 Стр.: 163-173
DOI: 10.1016/j.ajhg.2016.05.025
Опубликовано: JUL 7 2016
IF 10.794

13) Alterations in pharmacological and behavioural responses in recombinant mouse line with an increased predisposition to catalepsy: role of the 5-HT1A receptor

https://www.ncbi.nlm.nih.gov/pubmed/27004983

Kulikova E. A., Bazovkina D. V., Akulov A. E., Tsybko A. S., Fursenko D. V., Kulikov A. V., Naumenko V. S., Ponimaskin E., Kondaurova E. M.

BRITISH JOURNAL OF PHARMACOLOGY
Том: 173 Выпуск: 13 Стр.: 2147-2161 Специальный выпуск: SI
DOI: 10.1111/bph.13484
Опубликовано: JUL 2016
IF 5.259

14) The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

https://www.ncbi.nlm.nih.gov/pubmed/27654912

Mallick S., Li H., Lipson M., Mathieson I., Gymrek M., Racimo F., Zhao M. Y., Chennagiri N., Nordenfelt S., Tandon A., Skoglund P., Lazaridis I., Sankararaman S., Fu Q. M., Rohland N., Renaud G., Erlich Y., Willems T., Gallo C., Spence J. P., Song Y. S., Poletti G., Balloux F., van Driem G., de Knijff P., Romero I. G., Jha A. R., Behar D. M., Bravi C. M., Capelli C., Hervig T., Moreno-Estrada A., Posukh O. L., Balanovska E., Balanovsky O., Karachanak-Yankova S., Sahakyan H., Toncheva D., Yepiskoposyan L., Tyler-Smith C., Xue Y., Abdullah M. S., Ruiz-Linares A., Beall C. M., Di Rienzo A., Jeong C., Starikovskaya E. B., Metspalu E., Parik J., Villems R., Henn B. M., Hodoglugil U., Mahley R., Sajantila A., Stamatoyannopoulos G., Wee J. T. S., Khusainova R., Khusnutdinova E., Litvinov S., Ayodo G., Comas D., Hammer M. F., Kivisild T., Klitz W., Winkler C. A., Labuda D., Bamshad M., Jorde L. B., Tishkoff S. A., Watkins W. S., Metspalu M., Dryomov S., Sukernik R., Singh L., Thangaraj K., Paabo S., Kelso J., Patterson N., Reich D.

NATURE
Том: 538 Выпуск: 7624 Стр.: 201-+
DOI: 10.1038/nature18964
Опубликовано: OCT 13 2016
IF 38.138

15) Manifestation of Huntington's disease pathology in human induced pluripotent stem cell-derived neurons

https://www.ncbi.nlm.nih.gov/pubmed/27080129

Nekrasov E. D., Vigont V. A., Klyushnikov S. A., Lebedeva O. S., Vassina E. M., Bogomazova A. N., Chestkov I. V., Semashko T. A., Kiseleva E., Suldina L. A., Bobrovsky P. A., Zimina O. A., Ryazantseva M. A., Skopin A. Y., Illarioshkin S. N., Kaznacheyeva E. V., Lagarkova M. A., Kiselev S. L

MOLECULAR NEURODEGENERATION
Том: 11
Номер статьи: 27
DOI: 10.1186/s13024-016-0092-5
Опубликовано: APR 14 2016
IF 6.51

16) Genomic analyses inform on migration events during the peopling of Eurasia

https://www.ncbi.nlm.nih.gov/pubmed/27654910

Pagani L., Lawson D. J., Jagoda E., Morseburg A., Eriksson A., Mitt M., Clemente F., Hudjashov G., DeGiorgio M., Saag L., Wall J. D., Cardona A., Magi R., Sayres M. A. W., Kaewert S., Inchley C., Scheib C. L., Jarve M., Karmin M., Jacobs G. S., Antao T., Iliescu F. M., Kushniarevich A., Ayub Q., Tyler-Smith C., Xue Y. L., Yunusbayev B., Tambets K., Mallick C. B., Pocheshkhova E., Andriadze G., Muller C., Westaway M. C., Lambert D. M., Zoraqi G., Turdikulova S., Dalimova D., Sabitov Z., Sultana G. N. N., Lachance J., Tishkoff S., Momynaliev K., Isakova J., Damba L. D., Gubina M., Nymadawa P., Evseeva I., Atramentova L., Utevska O., Ricaut F. X., Brucato N., Sudoyo H., Letellier T., Cox M. P., Barashkov N. A., Skaro V., Mulahasanovic L., Primorac D., Sahakyan H., Mormina M., Eichstaedt C. A., Lichman D. V., Abdullah S., Chaubey G., Wee J. T. S., Mihailov E., Karunas A., Litvinov S., Khusainova R., Ekomasova N., Akhmetova V., Khidiyatova I., Marjanovi D., Yepiskoposyan L., Behar D. M., Balanovska E., Metspalu A., Derenko M., Malyarchuk B., Voevoda M., Fedorova S. A., Osipova L. P., Mirazon M., Gerbault P., Leavesley M., Migliano A. B., Petraglia M., Balanovsky O., Khusnutdinova E. K., Metspalu E., Thomas M. G., Manica A., Nielsen R., Villems R., Willerslev E., Kivisild T., Metspalu M.

NATURE
Том: 538 Выпуск: 7624 Стр.: 238-+
DOI: 10.1038/nature19792
Опубликовано: OCT 13 2016
IF 38.138

17) Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Signification Change in the Affinity of TATA-Binding Protein for Human Gene Promoters

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819121/

Ponomarenko M. P., Arkova O., Rasskazov D., Ponomarenko P., Savinkova L., Kolchanov N.

FRONTIERS IN IMMUNOLOGY
Том: 7
Номер статьи: 130
DOI: 10.3389/fimmu.2016.00130
Опубликовано: APR 4 2016
IF 5.695

18) A strategy to eradicate well-developed Krebs-2 ascites in mice

https://www.ncbi.nlm.nih.gov/pubmed/26872383

Potter E. A., Dolgova E. V., Proskurina A. S., Minkevich A. M., Efremov Y. R., Taranov O. S., Omigov V. V., Nikolin V. P., Popova N. A., Bayborodin S. I., Ostanin A. A., Chernykh E. R., Kolchanov N. A., Shurdov M. A., Bogachev S.S.

ONCOTARGET
Том: 7 Выпуск: 10 Стр.: 11580-11594
Опубликовано: MAR 8 2016
IF 5.008

19) Molecular architecture of the DED chains at the DISC: regulation of procaspase-8 activation by short DED proteins c-FLIP and procaspase-8 prodomain

https://www.ncbi.nlm.nih.gov/pubmed/26494467

Schleich K., Buchbinder J. H., Pietkiewicz S., Kahne T., Warnken U., Ozturk S., Schnolzer M., Naumann M., Krammer P. H., Lavrik I. N.

CELL DEATH AND DIFFERENTIATION
Том: 23 Выпуск: 4 Стр.: 681-694
DOI: 10.1038/cdd.2015.137
Опубликовано: APR 2016
IF 8.218

20) Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

https://www.ncbi.nlm.nih.gov/pubmed/27126040

Zhernakova A., Kurilshikov A., Bonder M. J., Tigchelaar E. F., Schirmer M., Vatanen T., Mujagic Z., Vila A. V., Falony G., Vieira-Silva S., Wang J., Imhann F., Brandsma E., Jankipersadsing S. A., Joossens M., Cenit M. C., Deelen P., Swertz M. A., Weersma R. K., Feskens E. J. M., Netea M. G., Gevers D., Jonkers D., Franke L., Aulchenko Y. S., Huttenhower C., Raes J., Hofker M. H., Xavier R. J., Wijmenga C., Fu J. Y.

SCIENCE
Том: 352 Выпуск: 6285 Стр.: 565-569
DOI: 10.1126/science.aad3369
Опубликовано: APR 29 2016
IF 34.661

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