2006

2004

2002

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1998



PROCEEDINGS OF THE BGRS



Proceedings of the Third International Conference on Bioinformatics of Genome Regulation and Structure

BGRSĺ 2002
Novosibirsk, Russia
July 14 - 20, 2002

Volume 1

Volume 2

Volume 3

Volume 4



INTERNATIONAL PROGRAM COMMITTEE

LOCAL ORGANIZING COMMITTEE

SPONSORS

INTRODUCTION

PREFACE


Volume 1

CONTENTS

REGULATORY GENOMIC SEQUENCES

TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): ITS STATUS IN 2002
Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Pozdnyakov M.A., Podkolodny N.L., Naumochkin A.N., Romashchenko A.G., Kolchanov N.A.


THESAURUS AS A TOOL FOR SEARCHING TRRD DATABASE
Ananko E.A., Grigorovich D.A., Podkolodny N.L, Ignatieva E.V., Podkolodnaya O.A., Korostishevskaya I.M.


MATHEMATICAL TOOLS FOR REGULATORY SIGNALS EXTRACTION
Regnier M.


BIOINFORMATICS ANALYSIS OF PHOH FUNCTION AND REGULATION IN ACTINOBACTERIA
Kazakov A.E., Vassieva O., Gelfand M.S., Osterman A., Overbeek R.


PARALLEL ALGORITHM FOR SEARCHING REGULATORY SIGNAL IN BACTERIAL GENOME
Lyubetsky V.A., Rubanov L.I.


A GENETIC ALGORITHM FOR IDENTIFICATION OF REGULATORY SIGNALS
Stavrovskaya E.D., Mironov A.A.


SITEPROB: YET ANOTHER ALGORITHM TO FIND REGULATORY SIGNALS IN NUCLEOTIDE SEQUENCES
Vinogradov D.V., Mironov A.A.


YET ANOTHER DIGGING FOR DNA MOTIFS GIBBS SAMPLER
Favorov A.V., Gelfand M.S., Mironov A.A., Makeev V.J.


HNF1-ALPHA BINDING SITES IN A COMPUTER SEARCH
Lockwood C.R., Frayling T.M.


ANALYSYS TOOL FOR FINDING TRANSCRIPTION REGULATORY ELEMENTS, USING TRANSCRIPTION FACTOR DATA BASE (TFDB)
Mizushima H., Ichikawa H., Ohki M.


SITECON: A METHOD FOR RECOGNIZING TRANSCRIPTION FACTOR BINDING SITES BASING ON ANALYSIS OF THEIR CONSERVATIVE PHYSICOCHEMICAL AND CONFORMATIONAL PROPERTIES
Oshchepkov D.Yu., Turnaev I.I., Vityaev E.E.


STUDY OF THE CONTEXT-DEPENDENT CONFORMATIONAL AND PHYSICOCHEMICAL PROPERTIES OF DNA FUNCTIONAL SITES
Oshchepkov D.Yu., Turnaev I.I., Vityaev E.E.


RECOGNITION OF E2F TRANSCRIPTION FACTOR BINDING SITES
Turnaev I.I., Oshchepkov D.Yu., Podkolodnaya O.A.


RECOGNITION OF BINDING SITES FOR THE TRANSCRIPTION FACTORS SREBP, PPAR, HNF4, COUP-TF, AND SF-1 BY A GENETIC ALGORITHM BASED ON ITERATIVE DISCRIMINANT ANALYSIS
Levitsky V.G., Ignatieva E.V., Proscura A.L., Pozdnyakov M.A., Busygina T.V.


KERNEL METHOD FOR IDENTIFICATION OF LOCAL PATTERNS IN UNALIGNED SETS OF FUNCTIONAL SITES
Tikunov Y., Kel A.


A GIBBS SAMPLING ALGORITHM TO DETECT CLUSTERED CIS-ELEMENTS
Frith M.C., Hansen U., Weng Z.


ARGO_VIEWER: A SYSTEM FOR RECOGNITION AND ANALYSIS OF GENE REGULATORY ELEMENTS IN EUKARYOTES
Vishnevsky ╬.V., Ananko ┼.└., Ignatieva ┼.V., Podkolodnaya ╬.└., Stepanenko I.L., Vityaev ┼.┼.


PREDICTION OF POTENTIAL C/EBP/NF-.B COMPOSITE ELEMENTS USING THE MATRIXBASED SEARCH METHODS
Shelest E., Kel A.E., G÷▀ling E., Wingender E.


ANALYSIS OF THE REGULATORY REGIONS OF GENES INVOLVED IN THE IMMUNE SYSTEM OPERATION
Ananko ┼.└., Oshchepkov D.Yu., Levitsky V.G., Pozdnyakov M.A.


RECOGNITION OF EUKARYOTIC PROMOTERS USING GENETIC ALGORITHM BASED ON ITERATIVE DISCRIMINANT ANALYSIS
Levitsky V.G. Katokhin A.V., Lavryushev S.V.


PHYLOGENETIC FOOTPRINT. A NEW METHOD FOR PROMOTER ALIGNMENT
Cheremushkin E., Kel A.


SPECIFIC STRUCTURAL FEATURES OF THE PROMOTERS IN THE EUKARYOTIC tRNA GENES OF DIFFERENT TYPES
Kondrakhin Yu.V., Yudin N.S., Rogozin I.B., Naykova T.M., Voevoda M.I., Romaschenko A.G.


STRUCTURAL REORGANIZATION RESULTING IN THE APPEARANCE OF INTRAGENIC PROMOTER SPECIFIC TO DIFFERENT tRNA GENE TYPES IN EUKARYOTES
Naykova T.M., Kondrakhin Yu.V., Rogozin I.B., Voevoda M.I., Yudin N.S., Romaschenko A.G.


DO DROSOPHILA RETROTRANSPOSON LTRs CONTAIN FUNCTIONAL SITES CAPABLE OF PROVIDING HEAT SHOCK-INDUCIBLE TRANSCRIPTION?
Furman D.P., Katokhin A.V., Oshchepkov D.Yu., Stepanenko I.L.


ANALYSIS OF TOPOLOGICAL REPRESENTATIONS OF TRANSCRIPTIONAL REGULATORY REGIONS
Sand O., Vu T.D., Gilbert D., Viksna J.


VISUALIZATION OF DNA SEQUENCES BY COLOR CUBE TRANSFORMATION
Cheremushkin E.S., Kel A.E., Lobiv I.V., Murzin F.A., Polovinko O.N.


BINDING SITES FOR TRANSCRIPTION FACTORS: WHAT CAN TELL AN ISOLATED SEGMENT OF REGULATORY DNA?
Lifanov A.P., Nazina A.G., Makeev V.J., Papatsenko D.A., Regnier M., Desplan C.


ALL HUMAN GENOME ANALYSIS FOR REGULATORY SIGNALS
Wingender E., Kel A.E., Gobling E., Hornischer K., Lewicki-Potapov B., Tchekmenev D., Kel-Margoulis O.V.


GENERALIZED SPECTRAL PORTRAIT OF ESCHERICHIA COLI- TYPE REPLICATION ORIGIN.S PRIMARY STRUCTURE
Kravatskaya G.I., Esipova N.G.


STRUCTURE-FUNCTION RELATIONSHIP IN PROTEIN-DNA RECOGNITION
Sarai A.


THE IMPORTANCE OF GENOME REGULATION AND STRUCTURE TO THE PHARMACEUTICAL INDUSTRY
Hodgman T.C.


GENOME STRUCTURE AND FUNCTION

EXACT MAPPING OF PROKARYOTIC GENE STARTS
Baytaluk M.V., Gelfand M.S., Mironov A.A.


GENE PREDICTION IN GENOMIC DNA OF ASPERGILLUS
Neverov A.D., Gelfand M.S., Mironov A.A.


IDENTIFICATION OF CODING REGIONS IN GENOMES OF LOWER EUKARYOTES BY COMPOSITIONAL SEGMENTATION OF COMPLETE GENOMES
Paskhin A.I., Ramensky V.E., Gelfand M.S., Makeev V.J.


SYNONYMOUS CODON USAGE PECULIARITIES IN ESCHERICHIA COLI PROTEIN-CODING GENES AND NUCLEOTIDE FREQUENCY DISTRIBUTION IN HOMOLOGOUS GENES OF ATPSYNTHASE
Ermagambetov A.M., Ivashchenko T.A., Ivashchenko A.T., Gabdulina Zh., Goncharova A.V., Karpenjuk


MUTATIONAL HOTSPOTS IN THE P53 GENE REVEALED BY CLASSIFICATION ANALYSIS
Glazko G.V, Rogozin I.B.


MECHANISMS OF MUTAGENESIS AND THE ROLE OF LOCAL DNA SEQUENCE COMPLEXITY
Chuzhanova N.A., Cooper D.N.


SUBWORDS GRAPHS, GENERATED BY GENETIC SEQUENCES
Evdokimov A.A., Levin A.A.


INFORMATION CONCEPTION OF PERIODICITY OF SYMBOLIC TEXTS
Korotkov E.V., Korotkova M.A., Kudryashov N.A.


A CHARACTERISTIC TYPE OF LATENT PERIODICITY OF 21 BPS FOUND IN BACTERIAL GENES OF THE TRANSMEMBRANE CHEMORECEPTORS (MCP II)
Chaley M.B, Korotkov E.V., Kudryashov N.A.


PERICENTROMERIC ALPHA SATELLITES: NON-RANDOM DISTRIBUTION OF STRUCTURAL REARRANGEMENTS AND INSERTIONS OF DISPERSED ELEMENTS ALONG THE MONOMER
Oparina N.J., Lacroix M.-H., Mashkova T.D.


CLUSTERS OF LONG TERMINAL REPEATS OF HUMAN ENDOGENOUS RETROVIRUSES (KFAMILY)
Artamonova I.I., Gorodentseva T.N., Sverdlov E.D.


DISTRIBUTION OF SHORT INVERTED REPEATS FLANKING DNA FRAGMENTS IN CEREAL CHLOROPLAST GENOMES AND THEIR APPLICATION FOR PCR-FINGERPRINTING
Ignatov A.N., Mischenko A.S., Yambartsev A., Shimkevich A.V., Goloenko I.M., Dorokhov D.B., Skryabin K.G., Davydenko O.V.


IN SILICO ANALYSIS OF HUMAN GENOMIC SEQUENCES, ADJACENT TO HPV16 INTEGRATION SITES
Klimov E.A., Rakhmanaliev E.R.


DETECTION OF CONSERVATIVE CONFORMATIONAL PROPERTIES OF INSERTION SITES FOR DROSOPHILA RETROTRANSPOSONS
Oshchepkov D.Yu., Furman D.P., Katokhin A.V., Katokhina L.V.


NUCLEOSOMAL ORGANIZATION OF DROSOPHILA RETROTRANSPOSON INSERTION SITES
Katokhin A.V., Furman D.P., Levitsky V.G., Katokhina L.V.


ANALYSIS OF THE NUCLEOSOME POTENTIAL OF DNA SEQUENCES GENERATED BY SELEX-EXPERIMENTS AND POSSESSING BY THE LOW AND HIGH AFFINITY TO HISTONE OCTAMER
Levitsky V.G., Podkolodny N.A.


STUDY OF THE CONTEXT-DEPENDENT CONFORMATIONAL AND PHYSICOCHEMICAL PROPERTIES OF DNA TOPOISOMERASE I CLEAVAGE SITES
Oshchepkov D.Yu., Bugreev D.V., Vityaev E.E., Nevinsky G.A.


FOUR-NUCLEOTIDE-RULE. VIRAL GENOMES
Kramskova Zh.D., Ivashchenko T.A., Ivashchenko A.T.


IDENTIFICATION OF FOUR GENES ON HUMAN CHROMOSOME 3 HOMOLOGOUS TO THE KNOWN GENES ON OTHER CHROMOSOMES BY IN SILICO ANALYSIS
Rakhmanaliev E.R., Klimov E.A.


A MACROMOLECULAR MODELING AS A TOOL TO EXPAND BIOINFORMATICS DATABASES
Vorobjev Y.N.


LARGE PROPELLER DEFORMATIONS OF NUCLEOTIDE STEPS IN SHORT DNA DOUBLE HELIXES: QUANTUM-CHEMICAL MNDO/PM3 STUDY
Kabanov A.V., Komarov V.M., Yakushevich L.V., Teplukhin A.V.


EXAMPLE OF A RECONSTRUCTION OF EVOLUTION OF THE GENETIC CODE (GC)
Lenski S.V.


MULTIPLATFORM INTEGRATED PROGRAM PACKAGE JGENOMEEXPLORER FOR GENOMIC ANALYSIS
Dolgopolov A.Y., Dachtchian K.A., Novichkov P.S., Mironov A.A.


MANUAL ANNOTATION OF THE HUMAN AND MOUSE GENE INDEX: WWW.ALLGENES.ORG
Brunk B., Crabtree J., Diskin S., Mazzarelli J., Zigouras N., Alkalaeva E., Bogdanova V., Trifonoff V., Vorobjeva N., Katokhin A., Kolchanov N., Stoeckert C.


Volume 2

CONTENTS

COMPARATIVE AND EVOLUTIONARY GENOMICS

COMPARATIVE STUDY OF THE ORTHOPOXVIRUS GENES A27L, A56R, B8R, AND C11R
Babkin I.V., Mikheev M.V., Shchelkunov S.N.


COMPARATIVE STUDY OF THE ORTHOPOXVIRUS GENES B19R AND B29R
Mikheev M.V., Feshchenko M.V., Shchelkunov S.N.


ANALYSIS OF BACTERIAL RM-SYSTEMS THROUGH GENOME-SCALE ANALYSIS AND RELATED TAXONOMY ISSUES
Vandenbogaert M., Makeev V.


FNR/DNR/ANR-REGULON IN GAMMA-PROTEOBACTERIA
Gerasimova A.V., Rodionov D.A., Mironov A.A., Gelfand M.S.


SEARCH FOR REGULATORY SIGNALS IN GROUPS OF ORTHOLOGOUS GENES OF GAMMA . PROTEOBACTERIA
Danilova L.V., Gelfand M.S.


TRANSCRIPTIONAL REGULATION OF A NEW BACTERIOCIN-PRODUCING SYSTEM IN STREPTOCOCCUS EQUI.
Kotelnikova E.A., Gelfand M.S.


SYSTEMATIC PREDICTION OF REGULATORY INTERACTIONS IN THE LACI FAMILY OF TRANSCRIPTIONAL REGULATORS
Laikova O.N.


PREDICTION OF NEW ENZYME INVOLVED IN PEPTIDOGLYCAN RECYCLING
Panina E.M., Vassieva O., Gelfand M.S., Overbeek R.


BIOINFORMATICS APPROACH TO ANALYSIS OF REGULATION OF AROMATIC AMINO ACIDS BIOSYNTHESIS IN BACILLUS/CLOSTRIDIUM GROUP
Panina E., Vitrehschak A., Mironov A., Gelfand M.


REGULATION OF THE HEAT SHOCK RESPONSE OF Ô-, Ń- AND ň-PROTEOBACTERIA
Permina E.A., Gelfand M.S.


PURINE REGULON OF GAMMA-PROTEOBACTERIA
Ravcheyev D.A., Gelfand M.S., Mironov A.A., Rakhmaninova A.B.


COMPUTATIONAL ANALYSIS OF THE BIOTIN REGULON IN BACTERIAL GENOMES
Rodionov D.A., Mironov A.A., Gelfand M.S.


REGULATION OF BACTERIAL RIBOFLAVIN GENES BY A CONSERVED RNA STRUCTURAL ELEMENT
Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S.


MCMC METHOD FOR IDENTIFICATION OF ALLELIC PATTERNS IN DATA WITH QUANTITATIVELY DESCRIBABLE PHENOTYPIC FEATURES
Favorov A.V., Ochs M.F.


S-RNASES IN THREE PLANT FAMILIES WITH GAMETOPHYTIC SELF-INCOMPATIBILITY: PHYLOGENY RELATED TO A PUTATIVE NUMBER OF S-LOCI IN ROSACEAE
Alexeyenko A.V.


SURVEY OF HUMAN NON-SYNONYMOUS SNPs
Ramensky V.E., Bork P., Sunyaev S.R.


COMPUTATIONAL BIOLOGY AND ANALYSIS OF HUMAN POPULATIONS WITH USE OF DNA MARKERS
Zhivotovsky L.A.


THE CHANNEL CAPACITY OF SELECTIVE BREEDING: ULTIMATE LIMITS ON THE AMOUNT OF INFORMATION MAINTAINABLE IN THE GENOME
Watkins C.J.C.H.


METHOD OF HORIZONTAL GENE TRANSFER DETERMINATION USING PHYLOGENETIC DATA
Lyubetsky V.A., Vĺyugin V.V.


MINIMAL TREES IN PHYLOGENETIC SPACES
Ivanov A.O., Tuzhilin A.A.


COMPARATIVE ANALYSIS OF CODING SEQUENCES OF APETALA1 HOMOLOGUES
Omelyanchuk N.A., Gusev V.D., Nemytikova L.A., Aksenovich A.V.


SYSTEM COMPUTATIONAL BIOLOGY: ANALYSIS AND MODELLING OF GENE NETWORKS AND METABOLIC PATHWAYS

GENENET SYSTEM: ITS STATUS IN 2002
Ananko E.A., Podkolodny N.L., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Kolchanov N.A.


MOLECULAR-GENETICAL MECHANISMS OF ADIPOCYTE REGULATION: REPRESENTATION IN GENENET DATABASE
Proscura A.L., Ignatieva E.V.


GENE NETWORK OF GLUTATHIONE HOMEOSTASIS: A RESPONSE TO OXIDATIVE STRESS
Kudryavtseva A.N., Stepanenko I.L.


MOLECULAR GENETIC MECHANISMS REGULATING THE THYROID SYSTEM: DESCRIPTION IN THE TRRD AND GENENET DATABASES
Suslov V.V., Ignatieva E.V.


INTERPRETATION OF GENE NETWORKS IN THE CONTEXT OF ANOKHINĺS THEORY OF FUNCTIONAL SYSTEMS
Suslov V.V., Vityaev E.E., Ignatieva E.V.


ORGANIZATION OF THE GENE NETWORK OF APOPTOSIS
Stepanenko I.L., Grigorüfev S.A.


GENE NETWORK OF MACROPHAGE ACTIVATION UNDER THE ACTION OF INTERFERON-GAMMA AND LIPOPOLYSACCARIDES
Nedosekina E.A., Ananko E.A.


GENE NETWORK ON CELL CYCLE CONTROL
Turnaev I.I., Podkolodnaya O.A.


VARIABILITY OF FLOWER DEVELOPMENT GENE NETWORKS IN SEVERAL PLANT SPECIES
Aksenovich A.V.


NEGATIVE REGULATION OF PLANT PHOTOMORPHOGENESIS
Smirnova O.G., Ibragimova S.S., Shavrukov Yu.N., Stepanenko I.L.


A HYBRID NETWORK OF NITROGEN-FIXING NODULES: INTERGENOMIC INTERACTIONS OF BACTERIA AND HOST PLANT
Ibragimova S.S., Smirnova O.G., Shavrukov Yu.N., Stepanenko I.L.


GENE NETWORKS: PRINCIPLES OF ORGANIZATION AND MECHANISMS OF OPERATION AND INTEGRATION
Stepanenko I.L., Podkolodnaya O.A., Kolchanov N.A.


MEASUREMENTS OF PRECISION OF MOLECULAR MECHANISMS FOR EARLY DROSOPHILA EMBRYO SEGMENTATION
Spirov A.V., Holloway D.M.


BIOINFORMATIC ANALYSIS OF A MORPHOGENETIC FIELD IN DROSOPHILA
Reinitz J.B.


TEMPORAL CHANGES IN POSITION OF SEGMENTATION GENE EXPRESSION DOMAINS IN DROSOPHILA EARLY EMBRYO
Surkova S.Yu., Samsonova M.G., Myasnikova E.M.


IIUDB: AN OBJECT-ORIENTED SYSTEM FOR MODELLING, INTEGRATION AND ANALYSIS OF GENE CONTROLLED METABOLIC NETWORKS
Freier A., Hofestadt R., Lange M.


MODELLING PLANT DEVELOPMENT WITH GENE REGULATION NETWORKS INCLUDING SIGNALING AND CELL DIVISION
Mjolsness E., Jonsson H., Shapiro B.E., Meyerowitz E.M.


BIOUML . FRAMEWORK FOR VISUAL MODELLING AND SIMULATION OF BIOLOGICAL SYSTEMS
Kolpakov F.A.


A SYSTEM FOR VISUAL MODELLING OF GENE NETWORKSüf STRUCTURAL AND FUNCTIONAL ORGANIZATION
Loktev K.A., Tkachev Yu.A., Ananko E.A., Podkolodny N.L.


A GRAPH-THEORETIC APPROACH TO COMPUTER ANALYSIS OF GENE NETWORK STRUCTURE
Dobrynin A.A., Makarov L.I., Podkolodny N.L.


COMPUTER SYSTEMIC BIOLOGY: INFORMATIONAL AND SOFTWARE TOOLS FOR COMPLEX MOLECULAR BIOLOGICAL SYSTEMS
Kolchanov N.A., Podkolodny N.L., Likhoshvai V.A.


STRUCTURAL STABILITY OF DROSOPHILA CONTROL GENE SUBNETWORKS: COMPUTER EXPERIMENTS, QUANTITATIVE AND QUALITATIVE EVALUATION
Galimzyanov A.V., Tchuraev R.N.


TECHNOLOGY OF USING EXPERIMENTAL DATA FOR VERIFICATION OF MODELS OF GENE NETWORK OPERATION DYNAMICS
Likhoshvai V.A., Latypov A.F., Nedosekina E.A., Ratushny A.V., Podkolodny N.L.


COMPUTER ANALYSIS OF THE EFFECTS OF MUTATIONS IN LDL RECEPTOR GENE ON THE REGULATION OF CHOLESTEROL BIOSYNTHESIS IN THE CELL
Ratushny A.V., Likhoshvai V.A.


CONSTRUCTION OF MATHEMATICAL MODEL OF THE GENE NETWORK ON MACROPHAGE ACTIVATION UNDER THE ACTION OF IFN-â┴ AND LPS
Nedosekina E.A., Ananko E.A., Likhoshvai V.A.


ANALYSIS OF MUTATIONAL PORTRAITS OF GENE NETWORKS
Ratushny A.V., Likhoshvai V.A., Kolchanov N.A.


EVOLUTION OF DIPLOID GENE NETWORK OF CHOLESTEROL BIOSYNTHESIS REGULATION IN A CELL
Ratushny A.V., Likhoshvai V.A., Matushkin Yu.G., Kolchanov N.A.


DIAGNOSTICS OF MUTATIONS BASED ON ANALYSIS OF GENE NETWORKS
Borisova I.A., Zagoruiko N.G., Likhoshvai V.A., Ratushny A.V., Kolchanov N.A.


ON THE THEORY OF PREDICTION OF GLOBAL MODES IN THE FUNCTION OF GENE NETWORKS
Likhoshvai V.A., Matushkin Yu.G.


A STUDY OF THE FUNCTION MODES OF SYMMETRIC GENETIC NETWORKS
Likhoshvai V.A., Matushkin Yu.G., Fadeev S.I.


DEVELOPMENT OF THE PROGRAM SOFTWARE FOR MATHEMATIC MODELLING OF THE GENE NETWORK DYNAMICS
Fadeev S.I., Berezin A.Yu., Gainova I.A., Kogai V.V., Ratushny A.V., Likhoshvai V.A.


QUALITATIVE AND NUMERICAL STUDYING OF HYPOTHETICAL GENE NETWORKS BY THE EXAMPLE OF THE M(N,N) MODEL
Fadeev S.I., Klishevich M.A., Likhoshvai V.A.


DETERMINATION OF BIFURCATIONAL PARAMETER VALUES OF MATHEMATICAL MODEL M(n,k) OF HYPOTHETICAL GENE NETWORKS
Fadeev S.I., Vernikovskaya E.V., Purtov A.V., Likhoshvai V.A.


ANALYSIS OF PROPERTIES OF HYPOTHETICAL GENE NETWORKS WITH POSITIVE FEEDBACK
Fadeev S.I., Osokina V.A., Likhoshvai V.A.


A NOVEL ALGORITHM FOR IN-SILICO EST EXPRESSION PROFILING
Leyfer D., Funari V., Berwick R., Haverty P., Frith M., Tolan D.


GENOME-WIDE EXPRESSION PROFILING OF ESCHERICHIA COLI W3110: MICROARRAY AND STATISTIC ANALYSIS OF HEAT SHOCK REGULONS
Ozoline O.N., Fujita N., Ishihama A.


MICROARRAY IMAGING DATA READER SPOTVIEW
Milanesi L., Rizzi R.


PROBLEMS OF CONTROL OF GENE NETWORKS IN A SPACE OF STABLE STATES
Latypov A.F., Nikulichev Yu.V, Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A.


A METHOD OF SOLVING PROBLEMS OF OPTIMAL CONTROL IN DYNAMICS OF GENE NETWORKS
Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushnyi A.V., Matushkin Yu.G., Kolchanov N.A.


VIRTUAL REALITY AND REGULATORY SYSTEMS
Ratner V.A.


THE CONCEPT OF MOLECULAR GENETIC REGULATORY SYSTEMS (MGRS) AND POLYGENIC SYSTEMS
Ratner V.A., Vasylieva L.A.


THE CONCRETE POLYGENIC SYSTEM RADIUS INCOMPLETUS AS EXAMPLE OF ACCORDANCE OF THE MGRS NETS AND POLYGENIC SYSTEM
Ratner V.A., Vasylieva L.A.


FORMAL DESCRIPTION OF THE TREMATODE ECOPARASITIC SYSTEM ON USING THE GENENET DATA FORMAT
Vodyanitskii S.N., Yurlova N.I., Suslov V.V


Volume 3

CONTENTS

RNA COMPUTATIONAL BIOLOGY

GARNA INTERNET RESOURCE FOR THE ANALYSIS OF RNA SECONDARY STRUCTURE: ITS STATE IN 2002
Vorobiev D.G., Titov I.I., Ivanisenko V.A.


ALGORITHM FOR SEARCHING FOR ALTERNATIVE SECONDARY RNA STRUCTURES
Lyubetsky E.V., Lyubetsky V.A.


ALGORITHM FOR PREDICTING THE EVOLUTIONARILY CONSERVED SECONDARY STRUCTURES OF RNA
Vorobiev D.G.


AN ALGORITHM FOR SEARCHING FOR COMMON SECONDARY STRUCTURES IN A SET OF RNA SEQUENCES
Gorbunov K.Yu., Lyubetsky V.A.


REVEALING AND FUNCTIONAL ANALYSIS OF tRNA-LIKE SEQUENCES IN VARIOUS GENOMES
Frenkel F.E., Korotkov E.V.


A GENETIC ALGORITHM FOR THE INVERSE FOLDING PROBLEM OF RNA
Titov I.I., Palĺyanov A.Yu.


A DATABASE ON ALTERNATIVE SPLICE FORMS ON THE INTEGRATED GENETIC MAP SERVICE (IGMS)
Pospisil H., Herrmann A., Pankow H., Reich J.


ARE PATTERNS OF ALTERNATIVE SPLICING OF MAMMALIAN GENES CONSERVED?
Nurtdinov R.N., Artamonova I.I., Mironov A.A., Gelfand M.S.


DATABASE ON mRNA-LOCATED EUKARYOTIC TRANSLATIONAL SIGNALS
Kochetov A.V., Sarai A., Grigorovich D.A., Kolchanov N.A.


COMPARATIVE COMPUTATIONAL ANALYSIS OF 5'-REGION OF CYTOPLASMIC TYROSYL-TRNA SYNTHETASE GENE IN HIGHER EUKARYOTES
Nazarenko M.M., Odynets K.A., Kornelyuk A.I.


COMPUTER ANALYSIS OF mRNA UNTRANSLATED REGIONS OF HYPOXIA-INDUCED CORN GENES
Titov I.I., Kochetov A.V., Kolchanov N.A., Sarai A.


EFFECTS OF CORRELATIONS DURING RIBOSOME MOVEMENT ALONG mRNA
Titov I.I., Sarai A.


UNOPTIMAL TRANSLATION START SITE CORRELATES WITH INCREASED CONTENT OF IN-FRAME DOWNSTREAM AUG CODONS AT THE BEGINNING OF CDS OF EUKARYOTIC mRNAs
Kochetov A.V., Kolchanov N.A., Sarai A.


STRUCTURAL FEATURES OF mRNA REGION AT THE TRANSLATION START SITE
Likhoshvai V.A., Kochetov A.V., Matushkin Yu.G., Kolchanov N.A.


STUDY OF THE RELATIONS BETWEEN EXPRESSION LEVEL AND CONTEXTUAL CHARACTERISTICS OF YEAST GENE FUNCTIONAL REGIONS BY THE ZET METHOD
Pichueva A.G., Kochetov A.V., Zagoruiko N.G.


SHORT-RANGE CORRELATIONS IN GENE EXPRESSION PROFILES
Titov I.I., Pal'yanov A.Yu.


SEARCHING FOR THE ANTISENSE INTERACTIONS BETWEEN 5'UTR OF EUKARYOTIC GENES
Vorobiev D.G., Titov I.I., Omelyanchuk N.A.


TRANSLATION ELONGATION STAGES CRITICAL FOR THE EFFICIENCY OF GENE EXPRESSION IN UNICELLULAR ORGANISMS
Likhoshvai V.A., Matushkin Yu.G.


STUDY OF THE SPECIFIC CONTEXTUAL FEATURES OF TRANSLATION INITIATION AND TERMINATION REGIONS IN EUKARYOTES
Vishnevsky O.V., Avdeeva I.V., Kolchanov N.A.


THEORETICAL ANALYSIS OF TRANSLATIONAL EFFICIENCY OF THE AQUAPORIN 4 mRNA ISOFORMS
Alikina T.Y., Zelenin S.M., Bondar A.A.


A COMPUTER DIFFERENTIAL DISPLAY REVEALS GENES WITH SPECIFIC EXPRESSION PATTERNS: FROM POTENTIAL HUMAN TUMOR MARKERS DOWN TO PLANT STRESSRESISTANCE GENES
Baranova A.V., Lobashev A.V., Ivanov D.V., Krukovskaya L.L., Zinchenko V.V., Shestakov S.V., Kozlov A.P., Yankovsky N.K.


COMPUTATIONAL PROTEOMICS

DEVELOPMENT OF A STRATEGY FOR COMPUTER-ASSISTED SEARCHING FOR FUNCTIONALLY SIMILAR PROTEINS IN EVOLUTIONARILY DISTANT ORGANISMS
Bogdanov Yu.F., Dadashev S.Ya., Grishaeva T.M.


PROTEIN SEQUENCE STUDIES USING FRACTALS
Yenamandra S.P., Mitra C.K.


BATMAS30 - THE AMINO ACID SUBSTITUTION MATRIX FOR ALIGNMENT OF BACTERIAL TRANSPORTERS
Sutormin R.A., Rakhmaninova A.B., Gelfand M.S.


ANCHOR-BASED ALIGNMENT METHOD FOR THE SEQUENCE VS. SEQUENCE AND PROFILE VS. SEQUENCE ALIGNMENT
Sunyaev Sh.R., Bogopolsky G.A., Oleynikova N.V., Vlasov P.K., Finkelstein A.V., Roytberg M.A.


NEW METHOD OF LATENT PERIODICITY DETECTION MAY DETERMINE STRUCTURALLY RELATED PROTEINS AND PROTEIN FAMILIES
Laskin A., Korotkov E., Kudryashov N.


RARE RESIDUES FORM THE CHANNEL IN TRANSMEMBRANE TRANSPORTERS
Kalinina O.V., Makeev V.Ju., Sutormin R.A., Gelfand M.S., Rakhmaninova A.B.


RECOGNITION OF OCCURRENCE AND LOCALIZATION OF CLEAVAGE SITE I N SIGNAL PEPTIDES
Zagoruiko N.G., Kutnenko O.A., Nikolaev S.V., Ivanisenko V.A.


COMPARISON OF METHODS FOR PREDICTING PROTEASOME CLEAVAGE MOTIFS
Nikolaev S.V., Afonnikov D.A., Ivanisenko V.A., Bazhan S.I., Kolchanov N.A.


AN INDEX FOR ESTIMATING THE EFFICIENCY OF ANTIGENIC EPITOPE GENERATION DURING PROTEASOMAL PROTEOLYSIS
Nikolaev S.V., Ivanisenko V.A., Afonnikov D.A., Bazhan S.I., Kolchanov N.A.


BENCHMARKING OF PROGRAMS FOR RECOGNITION OF TRANSMEMBRANE SEGMENTS IN TRANSPORTER PROTEINS
Sadovskaya N.S., Sutormin R.A., Rakhmaninova A.B., Gelfand M.S.


PROTEIN PROFILES BASED ON STRUCTURAL DESCRIPTORS OF AMINO ACID RESIDUES
Sobolev B.N., Fomenko A.E., Filimonov D.A., Poroikov V.V.


COMPUTATIONAL ANALYSIS OF POTENTIAL DISULPHIDE BRIDGES IN PLANT DNA TOPOISOMERASE I
Konstantinov Y.M., Rogozin I.B., Tarasenko V.I.


LOGICAL ANALYSIS OF DATA APPROACH TO THE PREDICTION OF PROTEIN SECONDARY STRUCTURES
B│a┐ewicz J., Hammer P.L., úukasiak P.


NONSTANDARD APPROACH FOR aľHELICES ELUCIDATION
Kilosanidze G.T., Kutsenko A.S., Esipova N.G., Tumanyan V.G.


SPIDER SILK FIBROUS PROTEIN Ô-STRUCTURE AND LARGE PERIODICAL PATTERNS
Ragulina L.E., Makeev V.Ju., Esipova N.G., Tumanyan V.G., Bogush V.G., Sidoruk K.S., Debabov V.G.


CHARGE REPARAMETRIZATION FOR FAST ATOMIC-DETAIL CALCULATIONS IN PROTEINS
Schwarzl S.M., Huang D., Smith J.C., Fischer S.


CONFINEMENT MOLECULAR DYNAMICS AND ITS APPLICATION TO THE STUDY OF POTENTIAL ENERGY SURFACES AND CONFORMATIONAL TRANSITIONS IN BIOMOLECULES
Krivov S.V., Chekmarev S.F., Karplus M.


PREDOMINANT CONFORMATIONS OF OLIGOPEPTIDE FRAGMENTS OF GLOBULAR PROTEINS
Vlasov P.K., Kilosanidze G.T., Ukrainskii D.L., Tumanyan V.G., Esipova N.G.


RESOURCES FOR THE ANALYSIS OF PROTEIN SEQUENCES AND STRUCTURES IN THE GENEEXPRESS SYSTEM
Afonnikov D.A., Ivanisenko V.A., Grigorovich D.A., Valuev V.P., Nikolaev S.V., Kolchanov N.A.


ENPDB: A RETRIEVAL SYSTEM FOR THE PDB DATABANK
Grigorovich D.A., Ivanisenko V.A.


PDBSITE: A DATABASE ON PROTEIN ACTIVE SITES AND THEIR ENVIRONMENT
Ivanisenko V.A., Grigorovich D.A., Kolchanov N.A.


PDBSITESCAN: A TOOL FOR SEARCH FOR THE BEST-MATCHING SUPERPOSITION IN THE DATABASE PDBSITE
Ivanisenko V.A., Debelov V.A., Pintus S.S., Matsokin A.M., Nikolaev S.V., Grigorovich D.A., Kolchanov N.A.


COMBINING BIOINFORMATICS AND STRUCTURAL METHODS FOR ANALYSIS OF KEY FUNCTIONAL RESIDUES IN DNA REPAIR ENZYMES
Zharkov D.O., Grollman A.P.


CLASSIFICATION OF LOCAL SPATIAL ENVIRONMENT OF AMINO ACID RESIDUES BY PHYSICOCHEMICAL CHARACTERISTICS: ANALYSIS OF TRANSCRIPTION FACTOR DNA-BINDING DOMAINS
Afonnikov D.A., Nikolaev S.V., Ivanisenko V.A.


THE NUMBERS OF PROTEIN DOMAIN SEQUENCES AND PROTEIN CODING GENES IN THE EVOLVED PROTEOMES
Kuznetsov V.A., Pickalov V.V.


DESIGN OF A KNOTTED CUBIC-LATTICE PROTEIN
Titov I.I., Pal'yanov A.Yu., Ivanisenko V.A.


DOMAIN STRUCTURE OF GLOBULAR PROTEINS AND DNA-PROTEIN INTERACTIONS
Anashkina A.A., Berezovsky I.N., Namiot V.A., Tumanyan V.G., Esipova N.G.


CONTRIBUTION OF COORDINATED SUBSTITUTIONS TO THE CONSTANCY OF PHYSICOCHEMICAL PROPERTIES OF ATP-BINDING SITES IN PROTEIN KINASES
Afonnikov D.A.


MUTATION RATE OF RIBOSOMAL PROTEINS AND THE 3D STRUCTURE OF THE SMALL RIBOSOMAL SUBUNIT
Novichkov P.S., Gelfand M.S., Mironov A.A.


RELATIVE MUTATION RATE OF BACTERIAL PROTEINS AND PREDICTION OF THE DISTANCE BETWEEN ORTHOLOGOUS GENES
Novichkov P.S., Gelfand M.S., Mironov A.A.


STUDY OF CD150 CYTOPLASMIC TAIL INTERACTIONS WITH SH2-DOMAINS
Akimov Y.M., Sidorenko S.P.


PROTEIN FAMILY PATTERNS BANK PROF_PAT IS WORTHWHILE RIVAL TO WORLD-KNOWN ôSECONDARYö BANKS
Nizolenko L.Ph., Bachinsky A.G., Yarigin A.A., Naumochkin A.N.


MODELING OF CD150 CYTOPLASMIC TAIL INTERACTIONS WITH SH2D1A AND Fyn SH2-DOMAIN
Palagina G.S., Sidorenko S.P.


A MODIFIED GENETIC ALGORITHM WITH LOCAL AND GLOBAL SEARCH TECHNIQUES
Yang Z.L., Liu G.R., Lam K.Y.


METHODOLOGICAL PROBLEMS OF BIOINFORMATICS

EFFICIENT METHODS FOR ADEQUATE GRAPHICAL PRESENTING MOLECULES AND MOLECULAR COMPLEXES
Kravatsky Y.V., Nikitin A.M.


NATURAL CLASSIFICATION OF NUCLEOTIDE SEQUENCES
Vityaev E.E., Kostin V.S., Podkolodny N.L., Kolchanov N.A.


LOGICAL SPECIFICATION OF NEURAL NETWORKS
Mikhienko E.V., Goncharov S.S., Vityaev E.E.


GENOTYPE CLASSIFICATION AND ALLELIC PATTERN RECOGNITION USING KOHONEN SELF-ORGANIZING MAPS
Yuryev A., Makeyev A.


APPLICATION OF THE METHODS OF INTELLECTUAL DATA ANALYSIS TO SOLVING THE PROBLEMS OF BIOINFORMATICS
Zagoruiko N.G., Pichueva A.G., Kutnenko O.A., Borisova I.A., Kochetov A.V., Ivanisenko V.A., Nikolaev S.V., Likhoshvai V.A., Ratushny A.V., Kolchanov N.A.


SURVEY OF THE SCIENTIFIC DISCOVERY FOUNDATIONS
Vityaev E.E., Khomitheva I.V.


GENESIS OF THE MECHANISMS UNDERLYING DIRECTED SEARCH FOR BENEFICIAL MUTATIONS
Ananko G.G.


THE ARCHITECTURE OF CELL DEVICE
Tarasov D.S., Akberova N.I., Leontiev A.Yu.


ELECTRONIC ENCYCLOPAEDIA IN GENETICS. VERSION 1
Dromashko S.E., Makeyeva E.N., Zheludok A.A.


ON SPECIALIZATION ôBIOINFORMATICSö IN THE NOVOSIBIRSK STATE UNIVERSITY AND HIGH COLLEGE OF INFORMATICS OF NOVOSIBIRSK STATE UNIVERSITY
Kolchanov N.A., Valishev A.I., Popova N.A.


EDUCATIONAL COMPUTER PROGRAMS ôMENDELĺS LAWSö AND ôEXPERIMENTS WITH DROSOPHILA MELANOGASTERö
Berlizev A.A., Krasovitskiy A.M., Myasnikoff N.N., Biaysheva Z.M.


MEDIATION OF HETEROGENEOUS INFORMATION RESOURCES IN THE GENE EXPRESSION REGULATION DOMAIN
Kalinichenko L.A., Briukhov D.O., Zakharov V.N., Podkolodny N.L.


TOWARDS A METRICAL SPACE OF BIOLOGICAL SEQUENCES
Heymann S., Gabrielyan O.R., Ghazaryan G.G., Danielyan E.A., Hakobyan G.G., Hakobyan G.O.


OTHER TOPICS RELATED TO BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE

GENEEXPRESS-2002: AN INTEGRATED SYSTEM ON GENE EXPRESSION REGULATION
Kolchanov N.└., Podkolodny N.L., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Lavryushev S.V., Grigorovich D.A., Kochetov A.V., Orlova G.V., Titov I.I., Vishnevsky ╬.V., Orlov Yu.L., Ivanisenko V.A., Vorobiev D.G., Oshchepkov D.Yu., Omelyanchuk N.A., Pozdnyakov M.A., Afonnikov D.A., Matushkin Yu.G., Likhoshvai V.A., Ratushny A.V., Katokhin A.V., Turnaev I.I., Proskura A.L., Suslov V.V., Nedosekina E.A.


ANALYSIS OF THE SECONDARY STRUCTURE AND NUCLEOSOMAL POTENTIAL OF NOT I SITES OF THE HUMAN GENOME
Matushkin Yu.G., Levitsky V.G., Likhoshvai V.A., Vishnevsky O.V., Kutsenko A.S., Protopopov A.I., Zabarovsky E.R., Kolchanov N.A.


FRAGMENTS OF GENE NETWORK OF FLOWER DEVELOPMENT IN ARABIDOPSIS UNDER LONG DAY CONDITIONS AND THEIR DESCRIPTION IN THE GENENET SYSTEM
Omelyanchuk N.A., Aksenovich A.V.


RECOGNIZING FUNCTIONAL DNA SITES AND SEGMENTING GENOMES USING THE PROGRAM "COMPLEXITY"
Orlov Yu.L., Potapov V.N., Filippov V.P.


SOFTWARE PACKAGE LZCOMPOSER: ANALYSIS OF OCCURRENCE OF REPEATS IN COMPLETE GENOMES
Orlov Yu.L., Gusev V.D., Nemytikova L.A.


DETECTION OF THE CORE STRUCTURE OF TRANSCRIPTION FACTOR BINDING SITES
Pozdnyakov M.A., Vityaev E.E., Ananko E.A., Busygina T.V., Ignatieva E.V., Proskura A.L., Podkolodnaya O.A., Podkolodny N.L., Merkulova T.I., Kolchanov N.A.


EXPRESSION OF LIPID METABOLISM GENES: DESCRIPTION IN TRRD DATABASE AND COMPUTER-ASSISTED ANALYSIS
Proscura A.L., Levitsky V.G., Oshchepkov D.Yu., Pozdnyakov M.A., Ignatieva E.V.


GENE DISCOVERY COMPUTER SYSTEM FOR ANALYSIS OF REGULATORY REGIONS
Vityaev E.E., Pozdnyakov M.A., Orlov Yu.L., Vishnevsky O.V., Podkolodny N.L., Kolchanov N.A.


Volume 4

CONTENTS

SYNTHESIS, PHYSICO-CHEMICAL AND BIOLOGICAL STUDIES OF SEQUENCE-SPECIFIC CONJUGATES AS THE AGENTS FOR REGULATION OF GENE EXPRESSION ON THE LEVEL OF DOUBLE-STRANDED DNA
Sinyakov A.N., Arimondo P.B., Bailly C., Sun J.-Sh., Garestier T., Boutorine A.S., Ryabinin V.A., Helene C.


INTERACTION BETWEEN FLAP ENDONUCLEASE-1 AND REPLICATION PROTEIN A
Khodyreva S.N., Nazarkina J.K., Petruseva I.O., Safronov I.V., Lavrik O.I.


AN ENZYMATIC SYNTHESIS OF 5ĺ-END SUBSTITUTED OLIGONUCLEOTIDES USING T4 POLYNUCLEOTIDE KINASE AND Ń-AMIDES OF ATP, BEARING PHOTOREACTIVE GROUPS
Petrousseva I.O., Safronov I.V., Komarova N.I., Kamynina T.P., Lavrik O.I., Khodyreva S.N.


INTERACTIONS OF RPA AND FEN-1 WITH DNA STRUCTURES APPEARED IN DNA REPLICATION AND REPAIR
Khlimankov D.Yu., Rechkunova N.I., Khodyreva S.N., Petruseva I.O., Nazarkina J.K., Belousova E.A., Lavrik O.I.


SITE-SPECIFIC PHOTOMODIFICATION OF MAMMALIAN POLY(ADP-RIBOSE) POLYMERASE-1 WITH PHOTOREACTIVE DNA BASE EXCISION REPAIR INTERMEDIATE
Sukhanova M.V., Lavrik O.I., Safronov I.V., Khodyreva S.N.


BINARY SYSTEM OF PHOTOAFFINITY REAGENTS FOR SELECTIVE LABELLING OF DNA POLYMERASES IN NUCLEAR EXTRACT
Lebedeva N.A., Rechkunova N.I., Khodyreva S.N., Favre A., Lavrik O.I.


DOMAINS OF HUMAN REPLICATION PROTEIN A CONTACTING THE 3'-END OF THE PRIMER
Pestryakov P., Weisshart K., Khodyreva S.N., Nasheuer H.-P., Lavrik O.I.


AGE-ASSOCIATED CHANGES IN OXIDATIVE DAMAGE IN OXYS RATS WITH INCREASED SENSITIVITY TO FREE RADICALS AND PROTECTION OF THE RATS FROM OXIDATIVE DAMAGE BY MIRTILENE FORTE AND ADRUSEN ZINCO
Krysanova J.S., Sinitsyna O.I., Ishchenko A.A., Kolosova N.G., Vasyunina E.A., Nevinsky G.A.


AGE-ASSOCIATED CHANGES IN THE LEVELS OF OXIDATIVE STRESS MARKERS IN THE BRAIN OF OXYS RATS
Shcheglova T.V., Kolosova N.G., Sinitsina O.I., Vasunina E.A., Loskutova L.V.


REPAIR OF 8-OXOGUANINE IN DNA OF PROKARYOTES, WISTAR RATS AND OXYS RATS WITH OVERGENERATION OF FREE RADICALS
Nevinsky G.A., Ishchenko A.A., Sinitsina O.I., Vasunina E.A., Koval V.V., Vasilenko N.L., Saparbaev M., Fedorova O.S.


COMPUTATIONAL PREDICTION AND EXPERIMENTAL ANALYSIS OF THE CURVED DNAs AS THE HOT SPOTS OF RECOMBINATION
Timchenko T.V., Vasyunina E.A., Scheglova T.V., Rogozin I.B., Sinitsyna O.I.


CO-ORDINATION OF BASE EXCISION REPAIR
Allinson S.L., Dianov G.L.


SUBSTRATE SPECIFICITY OF DNA-HYDROLYZING ANTIBODIES FROM BLOOD OF PATIENTS WITH MULTIPLE SCLEROSIS
Baranovskii A.G., Buneva V.N., Doronin B.M., Mogelnitskii A.S., Favorova O.O., Nevinsky G.A.


BONE MARROW HEMOPOIESIS IN IMMUNOPATHOGENESIS OF AUTOIMMUNE-PRONE MRL/MPJLPR MICE
Orlovskaya I.A., Dubrovskaya V.V., Toporkova L.B., Chernykh E.R., Tikhonova M.A., Sakhno L.V., Buneva V.N., Kozlov V.A., Nevinsky G.A.


ISOLATION AND IDENTIFICATION OF CELL SURFACE NUCLEIC ACIDS-BINDING PROTEINS
Chelobanov B.P., Laktionov P.P., Kharkova M.V., Rykova E.Yu., Pyshnyi D.V., Pyshnaya I.A., Kim A.A., Sczakiel G., Vlassov V.V.


COMPUTER ANALYSIS OF SUGARBEET COMPLETE MTDNA SEQUENCE HELPS TO SELECT PRIMERS FOR EFFECTIVE PCR FINGERPRINTING
Ivanov M.K., Revenko A.S., Kabilov M.R., Dymshits G.M.


NONRADIOACTIVE TS-OLA TEST SYSTEMS FOR SNP GENOTYPING AND IDENTIFICATION OF KNOWN POINT MUTATIONS IN TARGET NUCLEIC ACID SEQUENCES
Ivanova E.M., Pyshnyi D.V., Skobeltsyna L.M., Dymshits G.M., Stepanov V.A., Odinokova O.N., Puzyrev V.P., Zarytova V.F.


CLONING OF SUPPRESSOR OF UNDERREPLICATION GENE FROM D. ERECTA
Yurlova A.A., Belyakin S.N., Makunin I.V., Zhimulev I.F.


SIGNAL TRANSDUCTION PATHWAYS INITIATED VIA CELL SURFACE RECEPTOR CD150
Sidorenko S.P., Mikhalap S.V., Shlapatska L.M., Yurchenko M.Yu., Akimov Yu.M., Chekhun V.F.


MOLECULAR APPROACHES TO STUDY STRESS ADAPTATION, BIOACTIVITY, AND PHYLOGENETIC RELATIONSHIPS WITHIN THE PORIFERA
Schroder H.C., Muller W.E.G.


COMPUTER ANALYSIS OF D-LOOP OF MITOCHONDRIAL DNA VARIATION IN ASIAN HORSE BREEDS
Udina I.G.


DOPAMINE AND JUVENILE HORMONE IN THE CONTROL OF DROSOPHILA REPRODUCTION UNDER NORMAL CONDITIONS AND HEAT STRESS
Gruntenko N.E., Adonjeva N.V., Karpova E.K., Chentsova N.A., Faddeeva N.V., Rauschenbach I.Yu.


THE GENOMIC ORGANIZATION AND EVOLUTION OF AEGILOPS SPELTOIDES SUBTELOMERIC REGIONS
Adonina I., Vatolina T., Scherban A., Salina E.A.


KARYOTYPE EVOLUTION IN MAMMALS: A REAPPRAISAL BY COMPARATIVE CHROMOSOME PAINTING
Graphodatsky A., Perelman P., Alkalaeva E., Trifonov V., Shtukkert A., Serdukova N., Biltueva L., Vorobieva N., Ferguson-Smith M.A., Yang F., OĺBrien P., Robinson T.J., Suwattana D., Sharipov I.K.


CORRELATIONS BETWEEN GENETIC AND CULTURAL TRAITS IN POPULATIONS OF HUMANS
Borinskaya S.A., Korotaev A.B.


PHYLOGEOGRAPHY OF MITOCHONDRIAL LINEAGES OF TURKIC AND URALIC . SPEAKING PEOPLE
Khusnutdinova E., Bermisheva M., Victorova T., Korshunova T., Salimova A., Svyatova G., Tambets K., Willems R.













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IC&G  SB RAS,
Laboratory of Theoretical Genetics