Sections: 1 2 3 4 5 6 7 8

DATABASES ON REGULATORY GENOMIC SEQUENCES AND REGULATORY PROTEINS

1. A PROMOTER DATABASE OF YEAST SACCHAROMYCES CEREVISIAE (SCPD).
   JIAN ZHU, ZHANG MICHAEL Q.
2. DEVELOPMENT OF A RECEPTOR DATABASE.
   KOTOKO NAKATA, TAKAKO TAKAI, TSUGUCHIKA KAMINUMA
3. HOX-PRO DB: THE WAYS OF EVOLUTION OF ENSEMBLES OF HOMEOBOX GENES-CONTROLLERS OF DEVELOPMENT.
   SPIROV A.V.
4. EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION.
   STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
5. TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0.
   KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
6. PROGRAMS FOR DATA INPUT TO THE TRANSCRIPTION REGULATORY REGIONS DATABASE.
   ANANKO E.A., NAUMOCHKIN A.N., FOKIN O.N., FROLOV A.S.
7. THE GLUCOCORTICOID-CONTROLLED GENE REGULATORY REGIONS DATABASE (GR-TRRD): THE USING FOR THE ELUCIDATION OF THE MECHANISMS OF CHEMICAL HEPATOCARCINOGENS ACTION.
   MERKULOVA T.I., MERKLOV V.M., KROPATCHEV K.Y., KALEDIN V.I.
8. INTERFERON-INDUCIBLE GENES - TRANSCRIPTION REGULATORY REGIONS DATABASE (IIG-TRRD).
   ANANKO E.A., BAZHAN S.I., BELOVA O.E.
9. THE ESRG-TRRD: DATABASE OF GENES WITH SPECIFIC TRANSCRIPTION REGULATION IN ERYTHROID CELLS.
   PODKOLODNAYA O.A., STEPANENKO I.L.
10. THE LIPID METABOLISM TRANSCRIPTION REGULATORY REGIONS DATABASE (LM-TRRD): TRANSCRIPTION REGULATION OF LIPID METABOLISM GENES.
    IGNATIEVA E.V.
11. PLANT-TRRD DATABASE.
    GORYACHKOVSKY T.N., ANANKO E.A., PELTEK S.E.
12. COMPEL: A DATABASE ON COMPOSITE REGULATORY ELEMENTS.
    KEL-MARGOULIS O.V., KEL A.E., FRISCH M., ROMASHCHENKO A.G., KOLCHANOV N.A., WINGENDER E.
13. SAMPLES AND ALIGNED: DATABASES FOR FUNCTIONAL SITE SEQUENCES.
    VOROBIEV D.G., PONOMARENKO J.V., PODKOLODNAYA O.A.
14. ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES.
    PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
15. B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES.
    PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
16. GENEEXPRESS SYSTEM: DESCRIPTION, ANALYSIS, AND RECOGNITION OF REGULATORY SEQUENCES IN EUKARYOTIC GENOMES.
    KOLCHANOV N.A., PONOMARENKO M.P., KONDRAKHIN Y.V., FROLOV A.S., KOLPAKOV F.A., KEL A.E., KEL-MARGOULIS O.V., ANANKO E.A., IGNATIEVA E.V., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., BABENKO V.N., VOROBIEV D.G., LAVRYUSHEV S.V., GRIGOROVICH D.A., PONOMARENKO J.V., KOCHETOV A.V., KOLESOV G.B., PODKOLODNY N.L., WINGENDER E., HAINEMEIER T., MILANESI L., SOLOVYEV V.V., OVERTON G.C.

    GENE NETWORKS: DATABASES, COMPUTER ANALYSIS, MODELLING OF METABOLIC PATHWAYS/RESPONSE

17. GENET, A DATABASE OF GENETIC NETWORKS.
    SAMSONOVA M.G., SAVOSTYANOVA E.G., SEROV V.N., SPIROV A.V., REINITZ J.
18. GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM.
    ANANKO E.A., KOLPAKOV F.A., KOLESOV G.B., KOLCHANOV N.A.
19. MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL.
    FREIER A., HODING M., HOFESTADT R., LANGE M, SCHOLZ U.
20. THEORY OF MOLECULAR GENETIC REGULATORY SYSTEMS (MGRS): KEY IDEAS AND RESULTS.
    RATNER V.A.
21. MODELING SIGNAL PATHWAYS.
    BENTOLILA SIMONE
22. A VIRTUAL CELL WITH 127 GENES.
    TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
23. A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS.
    TSUGUCHIKA KAMINUMA, IGARASHI TAKAKO, NAKANO TATSUYA, SASAKI SHINYA, MIWA JOHJI
24. FLOWER MORPHOGENESIS IN ARABIDOPSIS THALIANA: A LOGICAL ANALYSIS.
    MENDOZA LUIS, ALVAREZ-BUYLLA ELENA, THIEFFRY DENIS
25. INTEGRATING OF KNOWLEDGE ON REGULATION OF MX1 PROTEIN INDUCTION AND ANTIVIRAL ACTION BY A MATHEMATICAL MODELING APPROACH.
    BAZHAN S.I., BELOVA O.E.
26. THE EQUATIONS OF DYNAMICS OF GENES ACTIVITIES IN A GENERAL VIEW.
    TCHURAEU R.N.
27. REGULATION MECHANISMS IN BIOLOGICAL SYSTEMS.
    KOLCHANOV N.A., MATUSHKIN Yu.G., FROLOV A.S.
28. GENETIC LEVEL OF BIOPROCESSES REGULATION AND BIOSYSTEMS IN EXTREME CONDITIONS.
    NEFEDOV V.P., CHEREPANOVA E.Yu.

    REGULATORY GENOMIC SEQUENCES: COMPUTER ANALYSIS AND RECOGNITION, MOLECULAR MECHANISMS OF FUNCTIONING

29. A MODULAR METAPROFILE-BASED SYSTEM FOR PREDICTION AND ANALYSIS OF EUKARYOTIC PROMOTERS.
    JUNIER THOMAS, KROGH ANDERS, BUCHER PHILIPP
30. A NEW METHOD OF SPECTRAL ANALYSIS OF DNA/RNA AND PROTEIN SEQUENCES.
    BAJIC V.B., BAJIC I.V., HIDE W.
31. RECOGNITION OF THE SUBSET OF EUKARYOTIC PROMOTERS.
    KONDRAKHIN Y.V., OVERTON G.C.
32. PROMOTERS: AT/GC CONTENT AND PROPERTIES OF TATA BOX.
    KOSAREV P., BABENKO V.N.
33. SPECIFIC FEATURES OF X-LINKED PROMOTER SEQUENCES IN DROSOPHILA.
    ARKHIPOVA IRINA R.
34. DNA STRUCTURE IN HUMAN RNA POLYMERASE II PROMOTERS.
    PEDERSEN ANDERS GORM, BALDI PIERRE, CHAUVIN YVES, BRUNAK SOREN
35. A PROGRAM FOR CALCULATING GAPPED DINUCLEOTIDE CORRELATIONS IN NUCLEIC ACID SEQUENCES AND ITS APPLICATION TO REVEAL SPECIFIC SEQUENCE FEATURES OF X-LINKED PROMOTERS IN DROSOPHILA.
    ARKHIPOVA IRINA R., POKROVSKI SERGEI V.
36. A SYSTEM FOR ACTIVATION OF THE TRRD DATABASE: FURTHER DEVELOPMENT OF GENEEXPRESS.
    FROLOV A.S., LAVRYUSHEV S.V., VOROBIEV D.G., GRIGOROVICH D.A.
37. COMBINATORIAL IDENTIFICATION OF PROMOTERS INDUCED UPON IMMUNE CELL ACTIVATION.
    KEL A.E., KEL-MARGOULIS O.V., BABENKO V.N., WINGENDER E.
38. SEARCH FOR DEGENERATE OLIGONUCLEOTIDE MOTIFS IN TRANSCRIPTION FACTOR BINDING SITES AND EUKARYOTIC PROMOTERS (THE SYSTEM ARGO).
    VISHNEVSKY O.V., PODKOLODNAYA O.A., BABENKO V.N.
39. COMPUTER ANALYSIS OF TRANSCRIPTION REGULATORY PATTERNS IN COMPLETELY SEQUENCED BACTERIAL GENOMES.
    GELFAND M.S., MIRONOV A.A.
40. MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70.
    KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
41. ANALYSIS OF COMPLETED GENOMES SUGGESTS THAT HAIRPIN FORMATION IS NOT A UNIVERSAL MECHANISM FOR PROCARYOTIC TRANSCRIPTION TERMINATION.
    TAKANORI WASHIO, TOMITA MASARU
42. RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS.
    PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
43. OCT PROTEINS AND OCT GENES: DNA RECOGNITION AND TRANSCRIPTIONALREGULATION.
    POLANOVSKY O.L., PANKRATOVA E.V., STEPCHENKO A.G.
44. QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES.
    SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
45. NEW FUNCTIONS OF P53 GENE: REGULATORY AND HYPERSENSITIVE SITES IN EXONS OF MUTANT P53 MRNA FORMS.
    BLINOV V.M., RESENCHUK S.M., CHIRIKOVA G.B., PETROV N.A., PUZYREV A.A., ORESHKOVA S.F., KUVSHINOV V.N., ILYICHEV A.A., ROMASHCHENKO A.G., RUZANKINA Ya.S., MARTYNOV Yu.A., VINOGRADOV S.S., VOEVODA M.I., VARDASANIDZE K.S., KISSELEV L.L., MARTYNYUK R.A., SANDAKHCHIEV L.S., KARAKIN E.I.
46. IN SILICO IDENTIFICATION OF MARS/SARS IN DNA SEQUENCES.
    GLAZKO G.V., ROGOZIN I.B., GLAZKOV M.V.
47. SOME POSSIBLE ELEMENTS OF TRANSCRIPTION REGULATION OF RICE CHLOROPLAST ENCODED GENES.
    SHAHMURADOV I.A., MUSTAFAYEV N.Sh., ALIEV J.A.
48. ANALYSIS OF FUNCTIONAL SITE MOTIFS OF MOBILE GENETIC ELEMENTS RELATIVE TO THEIR POSSIBLE MOLECULAR FUNCTIONS.
    AMIKISHIEV V.G., RATNER V.A.
49. TOWARDS UNDERSTANDING OF REGULATION OF NON-LTR RETROTRANSPOSONS: RTE-1 ELEMENT OF THE NEMATODE CAENORHABDITIS ELEGANS.
    BEREZIKOV E., BLINOV A., BERGTROM G.
50. LARGE SCALE SCREENING FOR TRANSCRIPTION REGULATORY SEQUENCES RECOGNISED BY HOX HOMEODOMAIN PROTEINS.
    JAKT L.M., SHAM M.H.
51. FUNCTIONAL ACTIVITY OF A NOVEL GCC-ELEMENT FOUND IN HOMOLOGOUS REGULATORY REGIONS OF SOME HUMAN GENES.
    PEREVOZCHIKOV A., ORLOV S.
52. REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES.
    PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
53. CLASSIFICATION OF EUKARYOTIC TRANSCRIPTION FACTORS BASED ON SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THEIR BINDING SITES.
    PONOMARENKO J.V.
54. FINE STRUCTURE OF THE PROFILE OF BENDING STIFFNESS ENERGY OF NUCLEOSOMAL DNA.
    LEVITSKY V.G.
55. A NEW CUT-OFF ESTIMATING ALGORITHM FOR TRANSCRIPTION FACTOR BINDABILITY ON DNA.
    TSUNODA T., TAKAGI T.
56. IDENTIFYING DNA AND PROTEIN PATTERNS WITH STATISTICALLY SIGNIFICANT ALIGNMENT MATRICES.
    HERTZ GERALD Z., STORMO GARY D.
57. CONTEXT-FREE METHOD OF PATTERN RECOGNITION IN THE GENETIC TEXTS.
    AKBEROVA N., KOLPAKOV A., LEONTIEV A.
58. SOME PECULIARITIES OF LONG-RANGE INTERACTION BETWEEN NUCLEOTIDES IN THE INTRACELLULAR LIQUIDS.
    PINCHUK A.O., VYSOTSKII V.I.
59. STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS.
    KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
60. EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS.
    KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
61. EXTRACTING KOZAK CONSENSUS SEQUENCE USING KLEISLI.
    JING CHEN, NAM-HAI CHUA, DAPHNA STRAUSS, LIMSOON WONG
62. ON NEGATIVE SELECTION AGAINST ATG TRIPLETS NEAR START CODONS IN EUCARYOTIC AND PROCARYOTIC GENOMES.
    RINTARO SAITO, TOMITA MASARU
63. COMPUTER ANALYSIS OF BASE PAIRING FREE-ENERGY BETWEEN SHINE-DALGARNO SEQUENCE AND 16S RRNA SEQUENCE IN VARIOUS PROCARYOTES.
    OSADA YUKO, RINTARO SAITO, TOMITA MASARU
64. CONSERVED RNA STRUCTURES REGULATE INITIATION OF TRANLSATION OF ESCERICHIA COLI AND HAEMOPHILUS INFLUENZAE RIBOSOMAL PROTEIN OPERONS.
    VITRESCHAK A., BANSAL A.K., GELFAND M.S.

    GENE RECOGNITION AND ANALYSIS, GENERAL PROBLEMS OF COMPUTATIONAL GENOMICS

65. SOME PROBLEMS OF GENE RECOGNITION IN PROTIST DNA.
    ASTAKHOVA T.V., GELFAND M.S., ROYTBERG M.A.
66. THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER.
    LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
67. GENE RECOGNITION USING EST DATA: UNEXPECTEDLY FREQUENT ALTERNATIVE SPLICING OF HUMAN GENES.
    MIRONOV A.A., GELFAND M.S.
68. WEBGENE: INTERACTIVE TOOLS FOR PREDICTION AND ANALYSIS OF PROTEIN-CODING GENES STRUCTURE IN INTERNET.
    MILANESI L., ROGOZIN I.B., D’ANGELO D.
69. ASYMMETRICAL CODING SEQUENCE REPARTITION AND CODON ADAPTATION INDEX VALUES BETWEEN LEADING AND LAGGING STRANDS IN SEVEN BACTERIAL SPECIES.
    PERRIERE G., LOBRY J.R.
70. TRIPLET PERIODICITY OF THE DNA CODING AND NONCODING REGIONS.
    RUDENKO V.M., KOROTKOV E.V.
71. A PROBABLE MUTUAL RELATIONSHIP BETWEEN LATENT PERIODIC GENE STRUCTURE AND PERIODIC CONFORMATION OF THE PROTEIN.
    CHALEY M.B., KOROTKOV E.V.
72. SELF-ORGANIZING NEURAL NETWORKS HIGHLIGHT POSSIBLE FUNCTIONALLY RELEVANT REGIONS IN THE C-DNA CODING SEQUENCES OF G-PROTEIN COUPLED RECEPTORS.
    CASADIO R., ARRIGO P., FARISELLI P.
73. HOW BASICS OF PROTEIN EVOLUTION COULD HELP THE GENE FINDING.
    TRIFONOV E.N.
74. MGL-PROT: THE ANTHOLOGY-BASED QUERY LANGUAGE FOR THE USER SEARCH FOR THE 3D STRUCTURES AND FUNCTIONS OF PROTEINS IN THE WWW-AVAILABLE DATABASES.
    KOLPAKOV F.A., FROLOV A.S., PONOMARENKO M.P., PODKOLODNY N.L.
75. PRE-MRNA SPLICING IN EUKARYOTES - INTRON STRUCTURE, INTRON DETECTION, ALGORITHMS AND DATA STRUCTURES.
    CHEKMENEV D.S.
76. SELECTIVE MODELS FOR MAPPING OF GENES IDENTIFIED IN RADIATION HYBRIDS.
    SVISCHEVA G.R.
77. MINIMUM ENTROPY PRINCIPLE AND CLASSIFICATION OF SYMBOLS FOR REVEALING STATISTICAL REGULARITIES IN A TEXT.
    BUGAENKO N.N., GORBAN A.N., SAPOZHNIKOV A.N.
78. MAXIMUM ENTROPY PRINCIPLE AND MEASUREMENT OF INFORMATION CONTENT OF GENETIC TEXT.
    BUGAENKO N.N., GORBAN A.N., SADOVSKY M.G.
79. SEGMENTATION OF YEAST DNA USING HIDDEN MARKOV MODELS.
    PESHKIN L., GELFAND M.S.
80. CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH.
    ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
81. PREDICTING RNA FOLDING BY GENETIC ALGORITHM WITH LOCAL EXHAUSTION.
    TITOV I.I., IVANISENKO V.A., KOLCHANOV N.A.
82. STATISTICAL MODEL OF DOUBLE HELIX GROWTH.
    TITOV I.I.
83. RAPID ESTIMATES OF STATISTICAL SIGNIFICANCE OF THE PAIRWISE NUCLEOTIDE SEQUENCE ALIGNMENT.
    SELEDTSOV I.A., KOLPAKOV F.A.

    COMPARATIVE AND EVOLUTIONARY GENOMICS

84. THEATRE: A NOVEL TOOL FOR THE COMPARATIVE INVESTIGATION AND DISPLAY OF EVOLUTIONARY DIVERSITY OF FUNCTIONAL AND STRUCTURAL FEATURES IN DNA SEQUENCES.
    EDWARDS Y.J.K., FRITH M., ELGAR G., BISHOP M.J.
85. SEQUENCE ALIGNMENT WITHOUT GAP PENALTIES.
    ROYTBERG M.A., SEMIONENKOV M.N., TABOLINA O.Yu.
86. AUTHOMATIC CLASSIFICATION OF NUCLEOTIDE SEQUENCES AND ITS RELATION TO NATURAL TAXONOMY AND PROTEIN FUNCTION.
    GORBAN A.N., POPOVA T.G., SADOVSKY M.G.
87. A NATURAL TAXONOMY OF GENE FAMILIES FROM COMPLETE GENOMES.
    TATUSOV R.L., KOONIN E.V., LIPMAN D.J.
88. GENOMES DATA IN ENTREZ: REPRESENTATION AND ANALYSIS.
    TATUSOVA T.A., OSTELL J.
89. INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME.
    BLINOV V.M., UVAROV D.L., RESENCHUK S.M., CHIRIKOVA G.B., KISSELEV L.L.
90. IMGT ALGORITHM AND RULES FOR IMMUNOGLOBULIN AND T-CELL RECEPTOR MOTIF RECOGNITION.
    GIUDICELLI VERONIQUE, CHAUME DENYS, MENNESSIER GERARD, LEFRANC MARIE-PAULE
91. THREE SUBFAMILIES OF SHORT INTERSPERSED ELEMENTS OF THE DOG GENOME: POSSIBLE ORIGIN AND FUNCTIONS.
    KOLESNIKOV N.N., ROGOZIN I.B., LAVRENTIEVA M.V., ELISAPHENKO E.A.
92. SEARCHING FOR THE IMMUNOGLOBULIN SUPERFAMILY GENES IN C.ELEGANS.
    TARANIN A.V., ROGOZIN I.B.
93. GENOME HOMOLOGY AND CHROMOSOMAL PHYLOGENETICS-COMPARATIVE COMPUTER ANALYSIS.
    ZAKHAROV I.A.
94. FROM GENOMICS TO EPIGENOMICS: DATA TRANSFERABILITY ACROSS THE EVOLUTIONARY SPECTRUM.
    GEORGE L. GABOR MIKLOS
95. REGRESSION ANALYSIS OF MUTATIONAL SPECTRA.
    ROGOZIN I.B., BERIKOV V.B.
96. THEORETICAL ANALYSIS OF POSSIBLE EVOLUTIONARY TRENDS IN CODON DISTRIBUTION ALONG THE mRNA.
    LIKHOSHVAI V.A., MATUSHKIN Yu.G.
97. THEORETICAL ANALYSIS OF MUTATION PATTERN OF THE CYTOCHROME P450 SUPERFAMILY.
    MATUSHKIN Yu.G., MOROZOVA I.N., MOROZOV P.S.
98. INFOGENE: A DATABASE OF KNOWN GENE STRUCTURES AND PREDICTED GENES AND PROTEINS IN SEQUENCES OF GENOME SEQUENCING PROJECTS.
    SOLOVYEV V.V., SALAMOV A.A.
99. RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE.
    VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS'MAK N.V., MOLODIN V.I.

    PROTEIN STRUCTURE ANALYSIS

100. ON THE NUMBER OF STRUCTURAL FAMILIES IN THE PROTEIN UNIVERSE.
     ALEXANDROV N., GO N.
101. LATENT PERIODICITY OF PROTEIN SEQUENCES.
     KOROTKOV E.V., KOROTKOVA M.A.
102. DETECTION OF SIMILAR PROTEINS BY THE INVERSE-FOLDING PROTOCOL.
     OTA MOTONORI, NISHIKAWA KEN
103. PROTEIN 3D ALIGNMENT SOFTWARE FOR INTEL COMPUTERS.
     VTYURIN N., BATURIN V., GULIN V., GORYACHEV N.
104. LIKENESS: A SYSTEM SEARCHING FOR AND ALIGNING SIMILAR PROTEIN CONFORMATIONS.
     PONOMARENKO M.P., KOLCHANOV N.A., SHINDYALOV I., BOURNE P.
105. STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION.
     EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
106. FUNCTIONAL RELATIONSHIP BETWEEN AMINO ACID RESIDUES AT N- AND C-TERMINI OF DNA-BINDING REGIONS OF TRANSCRIPTION FACTORS CREB AND AP-1 REVEALED BY ANALYZING THE PAIR CORRELATIONS OF AMINO ACID SUBSTITUTIONS.
     AFONNIKOV D., TITOV I.I.
107. STATISTICAL RELATION BETWEEN THE POSITIONS OF THE ALPHA-HELIX IN THE ZINC-FINGER DNA-BINDING DOMAIN: RESULTS FROM THE PHAGE DISPLAY DATA ANALYSIS.
     AFONNIKOV D., WINGENDER E.
108. THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES.
     NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
109. STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES.
     SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
110. INTERPRETATION OF X-RAY ANALYSIS DATA OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE ENZYME.
     BUGREEV D.V., VASYUTINA E.L., BUNEVA V.N., NEVINSKY G.A.
111. AUTOMATIC GENERATION OF RECOGNITION PROGRAMS FOR AMINO ACID SEQUENCES.
     VALUEV V.P., KUROPATOV D.A., PONOMARENKO M.P.
112. THE SEQUENCE PATTERN FOR THE GLYCOSYLPHOSPHATIDYL-ANCHOR POSTTRANSLATIONAL MODIFICATION AND ITS RECOGNITION IN PROPROTEIN SEQUENCES.
     EISENHABER BIRGIT
113. DISTURBANCES OF GENOM REGULATION AS THE CONSEQUENCE OF THE STRUCTURAL LIKENESS OF HIV-1 ENV PROTEINS AND HUMAN APOLIPOPROTEIN A-I.
     PANIN L.E., LUKASHEV V.A., GIMAUTDINOVA O.I.
114. ANALYSIS OF TRANSCRIPTIONAL FACTORS IN E. COLI.
     PEREZ-RUEDA E., VAN HELDEN J., WODAK S., COLLADO-VIDES J.
115. LACTOFERRIN IS A NEW TRANSCRIPTIONAL FACTOR HAVING MANY DIFFERENT UNIQUE BIOLOGICAL FUNCTIONS.
     KANYSHKOVA T.G., SEMENOV D.V., BUNEVA V.N., NEVINSKY G.A.
116. USE OF BIOINFORMATICS IN DEVELOPMENT OF PEPTIDE VACCINE.
     KOLASKAR A.S., URMILA KULKARNI-KALE, GORE M.M.
117. ANTIGENIC MIMICRY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 AS A RESULT OF STRUCTURAL SIMILARITY OF PROTEIN GP120 AND HUMAN APOLIPOPROTEIN A-1.
     LUKASHEV V.A., FROLOV A.S., PANIN L.E., GIMAUTDINOVA O.I.
118. THE LEUCINE MOTIF IN SUBUNITS 6 AND 9 OF PLANT MITOCHONDRIAL ATP SYNTHASE PROVIDING PRESUMABLY THE ASSEMBLY OF THE MEMBRANE PART OF THE ENZYME.
     KONSTANTINOV Yu.M., ARZIEV A.Sh., PODSOSONNY V.A.

     BIOINFORMATICS AND EDUCATION

119. BIOINFORMATICS FOR HUMANITARIANS.
     PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., PONOMARENKO J.V., KOLCHANOV N.A., MIKHAILOV Yu.I., MININA A.V., IVASHIN S.A.
120. BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW.
     PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
121. THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE LIFE GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW.
     AFONNIKOV D., KOLESOV G.B., MININA A.V., MIKHAILOV Yu.I., IVASHIN S.A.
122. BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE.
     PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.

     ABSTRACTS SUBMITTED AFTER THE DEADLINE

123. THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L..
     FALSHINA I.V., VERBITSKII D.S., ROGOZIN I.B., KONSTANTINOV Yu.M., TAUSON E.L.
124. NEW METHOD FOR THE STUDY OF THE MODULAR STRUCTURE OF TRANSCRIPTION REGULATORY REGIONS.
     KOLESOV G.B., KOLPAKOV F.A., KOLCHANOV N.A.
125. MGL: AN OBJECT-ORIENTED COMPUTER SYSTEM FOR MOLECULAR GENETIC DATA MANAGEMENT, ANALYSIS, AND VISUALIZATION.
     KOLPAKOV F.A., BABENKO V.N.
126. THE EFFICIENCY OF AN APPROXIMATION OF THE LIKELIHOOD BY CUTTING: DEPENDANCE ON A SIZE OF LOOPS IN A PEDIGREE.
     AULCHENKO Yu.S., AXENOVICH T.I.
127. SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES.
     PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.